Class: Phobius

Inherits:

Object

• Object
• Phobius

Includes:

TransmembraneIndex

Defined in:

lib/transmembrane/phobius.rb,
lib/transmembrane/phobius.rb

Defined Under Namespace

Modules: Parser Classes: Index, ParserShort

Class Method Summary

• .default_index(file, index = {}) ⇒ Object

  returns the default index.

Methods included from TransmembraneIndex

#avg_overlap, filetype, new, #num_certain_index, #num_overlapping_chars, #num_transmem_aa, #reference_to_key

Class Method Details

.default_index(file, index = {}) ⇒ Object

returns the default index

# File 'lib/transmembrane/phobius.rb', line 49

def self.default_index(file, index={})
  parser = Phobius::Parser.new(:short)
  parser.file_to_index(file, index)
end