Class: MiGA::Cli::Action::Generic

Inherits:
MiGA::Cli::Action show all
Defined in:
lib/miga/cli/action/generic.rb

Constant Summary

Constants included from MiGA

MiGA::CITATION, VERSION, VERSION_DATE, VERSION_NAME

Instance Attribute Summary

Attributes inherited from MiGA::Cli::Action

#cli

Attributes included from MiGA::Common::Net

#remote_connection_uri

Instance Method Summary collapse

Methods inherited from MiGA::Cli::Action

#empty_action, #initialize, #launch, load

Methods inherited from MiGA

CITATION, CITATION_ARRAY, DEBUG, DEBUG_OFF, DEBUG_ON, DEBUG_TRACE_OFF, DEBUG_TRACE_ON, FULL_VERSION, LONG_VERSION, VERSION, VERSION_DATE, #advance, debug?, debug_trace?, initialized?, #like_io?, #num_suffix, rc_path, #result_files_exist?, #say

Methods included from MiGA::Common::Path

#root_path, #script_path

Methods included from MiGA::Common::Format

#clean_fasta_file, #seqs_length, #tabulate

Methods included from MiGA::Common::Net

#download_file_ftp, #http_request, #known_hosts, #main_server, #net_method, #normalize_encoding, #remote_connection

Methods included from MiGA::Common::SystemCall

#run_cmd, #run_cmd_opts

Constructor Details

This class inherits a constructor from MiGA::Cli::Action

Instance Method Details

#complete ⇒ Object 



38
39
 
# File 'lib/miga/cli/action/generic.rb', line 38

def complete
end

#name ⇒ Object 



41
42
43
 
# File 'lib/miga/cli/action/generic.rb', line 41

def name
  '{action}'
end

#parse_cli ⇒ Object 



7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
 
# File 'lib/miga/cli/action/generic.rb', line 7

def parse_cli
  cli.opt_common = false
  cli.parse do |opt|
    descriptions = cli.class.TASK_DESC.keep_if { |k, v| k != :generic }
    opt.separator MiGA::MiGA.tabulate(
      [:action, :description], descriptions
    ).join("\n")
    opt.separator ''
    opt.separator 'generic options:'
    opt.on(
      '-h', '--help',
      'Display this screen'
    ) { puts opt; exit }
    opt.on(
      '-v', '--version',
      'Show MiGA version'
    ) { puts MiGA::MiGA.FULL_VERSION; exit }
    opt.on(
      '-V', '--long-version',
      'Show complete MiGA version'
    ) { |v| puts MiGA::MiGA.LONG_VERSION; exit }
    opt.on(
      '-C', '--citation',
      'How to cite MiGA'
    ) { |v| puts MiGA::MiGA.CITATION; exit }
  end
end

#perform ⇒ Object 



35
36
 
# File 'lib/miga/cli/action/generic.rb', line 35

def perform
end