Class: MiGA::GUI

Inherits:
Shoes
  • Object
show all
Defined in:
lib/miga/gui.rb

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.init(&block) ⇒ Object 



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# File 'lib/miga/gui.rb', line 29

def self.init (&block)
	 Shoes.app title: "MiGA | Microbial Genomes Atlas", width: 750, height: 400, &block
end

Instance Method Details

#dataset(name) ⇒ Object

Dataset details window



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# File 'lib/miga/gui.rb', line 107

def dataset(name)
	 stack(margin:40) do
	    ds = $project.dataset(name)
	    title ds.name.unmiga_name, align:"center"
	    caption "A dataset in ", strong(link($project.name.unmiga_name, :click=>"/datasets")), align:"center"
	    para ""
	    stack{ ds.metadata.each { |k,v| para strong(k), ": ", v } }
	    para ""
	    flow do
  w = 40+30*Dataset.PREPROCESSING_TASKS.size
  stack(width:w) do
		  subtitle "Advance"
		  done = self.graphic_advance(ds)
		  para sprintf("%.1f%% Complete", done*100)
  end
  stack(width:-w) do
		  subtitle "Task"
		  $task_name_field = stack { para "" }
		  animate do
 $task_name_field.clear{ para $task }
		  end
  end
	    end
	    para ""
	    MiGA.RESET_STATUS
	 end
end

#datasets ⇒ Object

Datasets list window



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# File 'lib/miga/gui.rb', line 89

def datasets
	 stack(margin:40) do
	    title $project.name.unmiga_name, align:"center"
	    caption $project.path, align:"center"
	    para ""
	    stack do
  para "Displaying #{$project.metadata[:datasets].size} datasets:"
  para ""
  $project.metadata[:datasets].each do |name|
		  para link(name, :click=>"/dataset-#{name}")
  end
	    end
	    para ""
	    MiGA.RESET_STATUS
	 end
end

#graphic_advance(ds, h = 10) ⇒ Object

status_bar



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# File 'lib/miga/gui.rb', line 237

def graphic_advance(ds, h=10)
	 ds_adv = ds.profile_advance
	 flow(width:30*Dataset.PREPROCESSING_TASKS.size) do
	    nostroke
	    i = 0
	    col = ["#CCC", rgb(119,130,61), rgb(160,41,50)]
	    ds_adv.each do |j|
  stack(width:28,margin:0,top:0,left:i*30,height:h) do
		  background col[j]
		  t = Dataset.PREPROCESSING_TASKS[i]
		  hover do
 $task = t
 $dataset = ds.name.unmiga_name
		  end
  end
  i += 1
	    end
	    nofill
	 end
	 return 0.0 if ds_adv.count{|i| i>0} <= 1
	 (ds_adv.count{|i| i==1}.to_f - 1.0)/(ds_adv.count{|i| i>0}.to_f - 1.0)
end

#index ⇒ Object

[ View : Windows ]

Main window



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# File 'lib/miga/gui.rb', line 35

def index
	 status_bar
	 stack(margin:40) do
	    title "Welcome to MiGA!", align:"center"
	    para ""
	    flow{ menu_bar [:open_project, :new_project, :help] }
	    para ""
	    stack do
  image $miga_path + "/gui/img/MiGA.png", width:150, height:50
  para ""
  para "If you use MiGA in your research, please consider citing:"
  para MiGA.CITATION
  para ""
	    end
	 end
	 MiGA.RESET_STATUS
	 keypress do |key|
	    if [:control_o, "o"].include? key
  MiGA.STATUS = "Calling open_project..."
  open_project
	    elsif [:control_n, "n"].include? key
  MiGA.STATUS = "Calling new_project..."
  new_project
	    end
	 end
end

#list_datasets ⇒ Object

new_project



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# File 'lib/miga/gui.rb', line 285

def list_datasets ; GUI.init{ visit "/datasets" } ; end

#menu_bar(actions) ⇒ Object

[ View : Elements ]

Menu bar



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# File 'lib/miga/gui.rb', line 196

def menu_bar actions
	 flow do
	    b = {
  open_project:["Open project", "iconmonstr-archive-5-icon-256"],
  new_project:["New project","iconmonstr-plus-5-icon-256"],
  list_datasets:["List datasets", "iconmonstr-note-10-icon-256"],
  new_dataset:["New dataset", "iconmonstr-note-25-icon-256"],
  progress_report:["Progress report", "iconmonstr-bar-chart-2-icon-256"],
  help:["Help", "iconmonstr-help-3-icon-256"]
	    }
	    actions.each do |k|
  v = b[k]
  flow(margin:0, width:200) do
		  image $miga_path + "/gui/img/#{v[1]}.png", width:40, height:40, margin:2
		  button v[0], top:5 do
 MiGA.STATUS = "Calling #{k}..."
 eval k.to_s
		  end
  end
	    end
	 end
end

#new_project ⇒ Object

open_project



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# File 'lib/miga/gui.rb', line 273

def new_project
	 GUI.init do
	    folder = ask_save_folder
	    if folder.nil? or Project.exist? folder
  alert "Cannot overwrite existent MiGA project at #{folder}!" unless folder.nil?
  return
	    else
  $project = Project.new folder
  visit "/project"
	    end
	 end
end

#open_project ⇒ Object

[ Controller : Projects ]


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# File 'lib/miga/gui.rb', line 261

def open_project
	 GUI.init do
	    folder = ask_open_folder
	    if folder.nil? or not Project.exist? folder
  alert "Cannot find a MiGA project at #{folder}!" unless folder.nil?
  return
	    else
  $project = Project.new folder
  visit '/project'
	    end
	 end
end

#progress_report ⇒ Object

progress_report



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# File 'lib/miga/gui.rb', line 286

def progress_report ; GUI.init{ visit "/report" } ; end

#project ⇒ Object

Project window



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# File 'lib/miga/gui.rb', line 63

def project
	 stack(margin:40) do
	    title $project.name.unmiga_name, align:"center"
	    caption $project.path, align:"center"
	    para ""
	    stack{ menu_bar [:list_datasets, :new_dataset, :progress_report, :help] }
	    para ""
	    stack do
  para strong("Datasets"), ": ", $project.metadata[:datasets].size
  $project.metadata.each { |k,v| para(strong(k), ": ", v) unless k==:datasets }
	    end
	    para ""
	 end
	 MiGA.RESET_STATUS
	 keypress do |key|
	    if [:control_r, "r"].include? key
  MiGA.STATUS = "Calling progress_report..."
  progress_report
	    elsif [:control_d, "d"].include? key
  MiGA.STATUS = "Calling list_datasets..."
  list_datasets
	    end
	 end
end

#report ⇒ Object

Project report window



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# File 'lib/miga/gui.rb', line 136

def report
	 stack(margin:40) do
	    title $project.name.unmiga_name, align:"center"
	    $done = 0.0
	    $me = self
	    flow do
  para ""
  w = 40+30*Dataset.PREPROCESSING_TASKS.size
  stack(width:w) do
		  para ""
		  subtitle "Dataset tasks advance:"
		  caption link("toggle"){ $adv_logo.toggle }
		  para ""
		  $adv_logo = stack do
 $project.each_dataset do |ds|
			$done += $me.graphic_advance(ds, 1)
 end
 motion do |x,y|
			unless $task.nil?
$task_ds_box.clear do
   subtitle "Task"
   para $task
   subtitle "Dataset"
   para $dataset
end
$task_ds_box.show
$task_ds_box.move(w,y-150)
			end
 end
 click do
			GUI.init{ visit "/dataset-#{$dataset}" } unless $dataset.nil?
 end
 leave do
			$task = nil
			$dataset = nil
			$task_ds_box.hide
 end
		  end
		  $done /= $project.metadata[:datasets].size
		  para sprintf("%.1f%% Complete", $done*100)
  end
  $task_ds_box = stack(width:-w)
	    end
	    if $done==1.0
  para ""
  stack do
		  subtitle "Project-wide tasks:"
		  Project.DISTANCE_TASKS.each { |t| para strong(t), ": ", ($project.add_result(t).nil? ? "Pending" : "Done") }
		  if $project.metadata[:type]==:clade
 Project.INCLADE_TASKS.each { |t| para strong(t), ": ", ($project.add_result(t).nil? ? "Pending" : "Done") }
		  end
  end
	    end
	    para ""
	    MiGA.RESET_STATUS
	 end
end

#status_bar ⇒ Object

Status bar



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# File 'lib/miga/gui.rb', line 220

def status_bar
	 stack(bottom:0) do
	    flow bottom:0, height:20, margin:0 do
  background "#CCC"
  stack(width:50)
  $status_cont = stack(width:-300, height:1.0)
  every do |i|
		  $status_cont.clear { inscription MiGA.STATUS, margin:5 }
  end
  stack(width:250, height:1.0) do
		  inscription MiGA.LONG_VERSION, align:"right", margin:5
  end
	    end
	    image $miga_path + "/gui/img/MiGA-sq.png", left:0, bottom:0, width:30, height:32
	 end
end