Class: Labimotion::Export

Inherits:
Object
  • Object
show all
Defined in:
lib/labimotion/utils/export.rb

Overview

Export

Class Method Summary collapse

Class Method Details

.fetch_dataset_klasses(&fetch_many) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 20

def self.fetch_dataset_klasses(&fetch_many)
  klasses = Labimotion::DatasetKlass.where(is_active: true)
  fetch_many.call(klasses, {'created_by' => 'User'})
end

.fetch_datasets(dataset, &fetch_one) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 65

def self.fetch_datasets(dataset, &fetch_one)
  return if dataset.nil?

  fetch_one.call(dataset, {
    'element_id' => 'Container',
  })
  fetch_one.call(dataset, {
    'element_id' => dataset.element_type,
    'dataset_klass_id' => 'Labimotion::DatasetKlass',
  })
  [dataset]
end

.fetch_element_klasses(&fetch_many) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 7

def self.fetch_element_klasses(&fetch_many)
  klasses = Labimotion::ElementKlass.where(is_active: true)
  fetch_many.call(klasses, {'created_by' => 'User'})
end

.fetch_elements(collection, segments, attachments, fetch_many, fetch_one, fetch_containers) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 25

def self.fetch_elements(collection, segments, attachments, fetch_many, fetch_one, fetch_containers)
  fetch_many.call(collection.elements, {
    'element_klass_id' => 'Labimotion::ElementKlass',
    'created_by' => 'User',
  })
  fetch_many.call(collection.collections_elements, {
          'collection_id' => 'Collection',
          'element_id' => 'Labimotion::Element',
  })
  collection.elements.each do |element|

    element, attachments = Labimotion::Export.fetch_properties(element, attachments, &fetch_one)
    fetch_containers.call(element)
    segment, @attachments = Labimotion::Export.fetch_segments(element, attachments, &fetch_one)
    segments += segment if segment.present?
  end

  [segments, attachments]

end

.fetch_properties(instance, attachments, &fetch_one) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 79

def self.fetch_properties(instance, attachments, &fetch_one)
  properties = instance.properties
  properties['layers'].keys.each do |key|
    layer = properties['layers'][key]

    # field_samples = layer['fields'].select { |ss| ss['type'] == 'drag_sample' }  -- TODO for elements
    # field_elements = layer['fields'].select { |ss| ss['type'] == 'drag_element' }  -- TODO for elements

    field_molecules = layer['fields'].select { |ss| ss['type'] == 'drag_molecule' }
    field_molecules.each do |field|
      idx = properties['layers'][key]['fields'].index(field)
      id = field["value"] && field["value"]["el_id"] unless idx.nil?
      mol = Molecule.find(id) unless id.nil?
      properties['layers'][key]['fields'][idx]['value']['el_id'] = fetch_one.call(mol) unless mol.nil?
    end
    field_uploads = layer['fields'].select { |ss| ss['type'] == 'upload' }
    field_uploads.each do |upload|
      idx = properties['layers'][key]['fields'].index(upload)
      files = upload["value"] && upload["value"]["files"]
      files&.each_with_index do |fi, fdx|
        att = Attachment.find(fi['aid'])
        attachments += [att]
        properties['layers'][key]['fields'][idx]['value']['files'][fdx]['aid'] = fetch_one.call(att, {'attachable_id' => 'Labimotion::Segment'}) unless att.nil?
      end
    end

    field_tables = properties['layers'][key]['fields'].select { |ss| ss['type'] == 'table' }
    field_tables&.each do |field|
      next unless field['sub_values'].present? && field['sub_fields'].present?
      # field_table_samples = field['sub_fields'].select { |ss| ss['type'] == 'drag_sample' }  -- not available yet
      # field_table_uploads = field['sub_fields'].select { |ss| ss['type'] == 'upload' }       -- not available yet
      field_table_molecules = field['sub_fields'].select { |ss| ss['type'] == 'drag_molecule' }
      if field_table_molecules.present?
        col_ids = field_table_molecules.map { |x| x.values[0] }
        col_ids.each do |col_id|
          field['sub_values'].each do |sub_value|
            next unless sub_value[col_id].present? && sub_value[col_id]['value'].present? && sub_value[col_id]['value']['el_id'].present?

            svalue = sub_value[col_id]['value']
            next unless svalue['el_id'].present? && svalue['el_inchikey'].present?

            tmol = Molecule.find_by(id: svalue['el_id'])
            sub_value[col_id]['value']['el_id'] = fetch_one.call(tmol) unless tmol.nil?
          end
        end
      end
    end

  end
  instance.properties = properties
  [instance, attachments]
end

.fetch_segment_klasses(&fetch_many) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 12

def self.fetch_segment_klasses(&fetch_many)
  klasses = Labimotion::SegmentKlass.where(is_active: true)
  fetch_many.call(klasses, {
    'element_klass_id' => 'Labimotion::ElementKlass',
    'created_by' => 'User'
    })
end

.fetch_segments(element, attachments, &fetch_one) ⇒ Object 



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# File 'lib/labimotion/utils/export.rb', line 46

def self.fetch_segments(element, attachments, &fetch_one)
  element_type = element.class.name
  segments = Labimotion::Segment.where("element_id = ? AND element_type = ?", element.id, element_type)
  segments.each do |segment|
    # segment = fetch_properties(segment)
    segment, attachments = Labimotion::Export.fetch_properties(segment, attachments, &fetch_one)
    # fetch_one.call(segment.segment_klass.element_klass)
    # fetch_one.call(segment.segment_klass, {
    #   'element_klass_id' => 'Labimotion::ElementKlass'
    # })
    fetch_one.call(segment, {
      'element_id' => segment.element_type,
      'segment_klass_id' => 'Labimotion::SegmentKlass',
      'created_by' => 'User'
    })
  end
  [segments, attachments]
end