Class: Inferno::DSL::FHIRResourceValidation::Validator
- Inherits:
-
Object
- Object
- Inferno::DSL::FHIRResourceValidation::Validator
- Defined in:
- lib/inferno/dsl/fhir_resource_validation.rb
Constant Summary collapse
- VALIDATOR_DEBUG_LOGGING_ENV_VAR =
Environment variable that, when set to a truthy-looking value, enables verbose validation logging (the validationContext sent with each request, and the resulting issues including which were filtered out) through Inferno's normal application logger, tagged with the validator definition and, when available, the test session and test that triggered the request.
'FHIR_RESOURCE_VALIDATOR_DEBUG_LOGGING'.freeze
- EXPANSION_PARAMETERS_ENV_VAR =
Environment variable containing the default expansion parameters. Used by #expansion_parameters when no value has been set explicitly. May contain either the raw JSON content of a FHIR Parameters resource (if it starts with
{) or a path to a file containing one. 'FHIR_RESOURCE_VALIDATOR_EXPANSION_PARAMETERS'.freeze
- TX_LOG_ENV_VAR =
Environment variable that, when set, enables terminology server request logging by the validator itself. Its value is sent as
txLogin the validationContext of every validation request, telling the validator where to log the terminology server requests it makes. Note that the log will appear within the container running the validator. 'FHIR_RESOURCE_VALIDATOR_TX_LOG'.freeze
Instance Attribute Summary collapse
-
#name ⇒ Object
Returns the value of attribute name.
-
#requirements ⇒ Object
readonly
Returns the value of attribute requirements.
-
#session_id ⇒ Object
Returns the value of attribute session_id.
-
#test_suite_id ⇒ Object
Returns the value of attribute test_suite_id.
Instance Method Summary collapse
-
#add_validation_messages_to_runnable(runnable, filtered_issues, message_prefix: '') ⇒ Object
Adds validation messages to the runnable.
-
#additional_validation_messages(target, profile_url) ⇒ Array<ValidatorIssue>
Gets additional validation messages from custom validation blocks.
-
#additional_validations ⇒ Object
Used internally by perform_additional_validation.
-
#apply_relationship_filters(issues) ⇒ Object
Performs filtering based on relationships between issues.
-
#apply_relationship_filters_to_children(issues) ⇒ Object
Performs filtering based on relationships between issues on the sub-issues of a list of issues.
-
#at_least_one_profile_without_errors?(details_issues) ⇒ Boolean
Checks if any profile is valid (all error-level slices are filtered).
- #build_expansion_parameters(value) ⇒ Object
-
#build_expansion_parameters_from_env(env_value) ⇒ Object
Determines whether the environment variable's content is raw JSON or a file path based on its first non-whitespace character.
- #build_expansion_parameters_from_json_content(json_content) ⇒ Object
-
#build_validation_context(profile_url) ⇒ Hash
Builds the validationContext sent with a request for the given profile.
- #call_validator(target, profile_url) ⇒ Object
- #conformant?(target, profile_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) ⇒ Boolean
-
#conforms_to_logical_model?(object, model_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) ⇒ Boolean
Validate a FHIR resource and determine if it's valid.
-
#contained_resource_profile_issue?(base_issue) ⇒ Boolean
Checks if a base issue should be processed for contained resource filtering.
-
#convert_raw_issue_to_validator_issue(raw_issue, target) ⇒ ValidatorIssue
Converts a single raw issue hash to a ValidatorIssue object.
- #debug_logging_enabled? ⇒ Boolean
-
#exclude_message {|message| ... } ⇒ Object
Filter out unwanted validation messages.
-
#exclude_unresolved_url_message ⇒ Proc
Filter for excluding unresolved URL validation messages.
-
#expansion_parameters(value = nil) ⇒ Object
Set the expansion parameters to be sent with each validation request.
-
#filter_contained_resource(issues, base_issue, base_index) ⇒ Object
Filters Reference_REF_CantMatchChoice errors for contained resources.
-
#filter_individual_messages(issues) ⇒ Object
Recursively filters validation issues by setting the filtered flag.
-
#find_following_profile_details_issues(issues, start_index, base_location) ⇒ Array<ValidatorIssue>
Finds consecutive Details messages following a base issue at the same location.
-
#get_issues_from_validator_response(response, target) ⇒ Array<ValidatorIssue>
Converts raw validator response into a list of ValidatorIssue objects.
-
#get_raw_validator_content(target, profile_url, runnable) ⇒ Faraday::Response
Gets raw content from validator including error handling.
-
#igs(*validator_igs) ⇒ Object
Set the IGs that the validator will need to load.
-
#initialize(name = nil, test_suite_id = nil, requirements = nil) ⇒ Validator
constructor
A new instance of Validator.
-
#issue_summary(issue) ⇒ Hash
Recursively builds a loggable summary of a validation issue, including nested slice_info, without any resource content.
-
#join_additional_validation_messages(issues, target, profile_url) ⇒ Array<ValidatorIssue>
Joins additional validation messages to the issues list.
-
#log_validation_result(profile_url, issues, runnable) ⇒ Object
Logs the validationContext and expansionParameters sent with a request together with the resulting issues (including which were filtered out) in a single entry, tagged with enough context to trace it back to the validator definition and triggering test run.
-
#mark_issues_for_filtering(issues) ⇒ Object
Marks validation issues for filtering by setting the filtered flag on issues that should be excluded.
-
#perform_additional_validation {|resource, profile_url| ... } ⇒ Object
Perform validation steps in addition to FHIR validation.
-
#remove_invalid_characters(string) ⇒ String
Removes invalid characters from a string to prepare for JSON parsing.
-
#resource_is_valid?(resource, profile_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) ⇒ Boolean
Validate a FHIR resource and determine if it's valid.
-
#should_filter_message?(message) ⇒ Boolean
Determines if a message should be filtered based on exclusion rules.
- #tx_log ⇒ Object
-
#url(validator_url = nil) ⇒ Object
Set the url of the validator service.
-
#validate(target, profile_url) ⇒ String
Post an object to the validation service for validating.
-
#validation_context(definition = nil) ⇒ Object
(also: #cli_context)
Set the validationContext used as part of each validation request.
-
#validator_error_message(error) ⇒ String
Add a specific error message for specific network problems to help the user.
- #validator_session_repo ⇒ Object
-
#warm_up(target, profile_url) ⇒ Object
Warm up the validator session by sending a test validation request.
- #wrap_target_for_hl7_wrapper(target, profile_url) ⇒ Object
Constructor Details
#initialize(name = nil, test_suite_id = nil, requirements = nil) ⇒ Validator
47 48 49 50 51 52 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 47 def initialize(name = nil, test_suite_id = nil, requirements = nil, &) @name = name @test_suite_id = test_suite_id instance_eval(&) @requirements = requirements end |
Instance Attribute Details
#name ⇒ Object
Returns the value of attribute name.
45 46 47 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 45 def name @name end |
#requirements ⇒ Object (readonly)
Returns the value of attribute requirements.
44 45 46 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 44 def requirements @requirements end |
#session_id ⇒ Object
Returns the value of attribute session_id.
45 46 47 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 45 def session_id @session_id end |
#test_suite_id ⇒ Object
Returns the value of attribute test_suite_id.
45 46 47 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 45 def test_suite_id @test_suite_id end |
Instance Method Details
#add_validation_messages_to_runnable(runnable, filtered_issues, message_prefix: '') ⇒ Object
Adds validation messages to the runnable
420 421 422 423 424 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 420 def (runnable, filtered_issues, message_prefix: '') filtered_issues.each do |issue| runnable.(issue.severity, "#{message_prefix}#{issue.message}") end end |
#additional_validation_messages(target, profile_url) ⇒ Array<ValidatorIssue>
Gets additional validation messages from custom validation blocks. Converts the message hashes to ValidatorIssue objects.
619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 619 def (target, profile_url) additional_validations .flat_map { |step| step.call(target, profile_url) } .select { || .is_a? Hash } .map do || # Create a synthetic raw_issue for additional validation messages synthetic_raw_issue = { 'level' => [:type].upcase, 'location' => 'additional_validation', 'message' => [:message] } ValidatorIssue.new( raw_issue: synthetic_raw_issue, target: target, slice_info: [], filtered: false ) end end |
#additional_validations ⇒ Object
Used internally by perform_additional_validation
260 261 262 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 260 def additional_validations @additional_validations ||= [] end |
#apply_relationship_filters(issues) ⇒ Object
Performs filtering based on relationships between issues. Processes sub-issues of each issue before processing the top-level issues.
683 684 685 686 687 688 689 690 691 692 693 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 683 def apply_relationship_filters(issues) apply_relationship_filters_to_children(issues) issues.each_with_index do |issue, index| next if issue.filtered # Skip if already filtered # Apply conditional filters. # As more are needed, split with a "next if issue.filtered" pattern and add the new filter. filter_contained_resource(issues, issue, index) end end |
#apply_relationship_filters_to_children(issues) ⇒ Object
Performs filtering based on relationships between issues on the sub-issues of a list of issues.
700 701 702 703 704 705 706 707 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 700 def apply_relationship_filters_to_children(issues) issues.each do |issue| next if issue.filtered # Skip if already filtered # Recursively process nested slice_info first (depth-first) apply_relationship_filters(issue.slice_info) if issue.slice_info.any? end end |
#at_least_one_profile_without_errors?(details_issues) ⇒ Boolean
Checks if any profile is valid (all error-level slices are filtered)
744 745 746 747 748 749 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 744 def at_least_one_profile_without_errors?(details_issues) details_issues.any? do |details_issue| error_level_slices = details_issue.slice_info.select { |s| s.severity == 'error' } error_level_slices.all?(&:filtered) end end |
#build_expansion_parameters(value) ⇒ Object
206 207 208 209 210 211 212 213 214 215 216 217 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 206 def build_expansion_parameters(value) case value when Hash build_expansion_parameters_from_json_content(value.to_json) else { fileName: File.basename(value), fileContent: File.read(value), fileType: nil } end end |
#build_expansion_parameters_from_env(env_value) ⇒ Object
Determines whether the environment variable's content is raw JSON or a file path based on its first non-whitespace character.
197 198 199 200 201 202 203 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 197 def build_expansion_parameters_from_env(env_value) if env_value.lstrip.start_with?('{') build_expansion_parameters_from_json_content(env_value) else build_expansion_parameters(env_value) end end |
#build_expansion_parameters_from_json_content(json_content) ⇒ Object
220 221 222 223 224 225 226 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 220 def build_expansion_parameters_from_json_content(json_content) { fileName: 'expansion_parameters.json', fileContent: json_content, fileType: nil } end |
#build_validation_context(profile_url) ⇒ Hash
Builds the validationContext sent with a request for the given
profile. Pulled out on its own (rather than inlined in
wrap_target_for_hl7_wrapper) so the same, resource-content-free
context can also be used for logging in log_validation_result.
249 250 251 252 253 254 255 256 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 249 def build_validation_context(profile_url) context = { **validation_context.definition, profiles: [profile_url] } context[:txLog] = tx_log if tx_log context end |
#call_validator(target, profile_url) ⇒ Object
492 493 494 495 496 497 498 499 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 492 def call_validator(target, profile_url) request_body = wrap_target_for_hl7_wrapper(target, profile_url) Faraday.new( url, request: { timeout: 600 } ).post('validate', request_body, content_type: 'application/json') end |
#conformant?(target, profile_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) ⇒ Boolean
366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 366 def conformant?(target, profile_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) # 1. Get raw content from validator response = get_raw_validator_content(target, profile_url, runnable) # 2. Convert to validation issues issues = get_issues_from_validator_response(response, target) # 3. Add additional validation messages issues = (issues, target, profile_url) # 4. Mark resources as filtered mark_issues_for_filtering(issues) log_validation_result(profile_url, issues, runnable) if debug_logging_enabled? # 5. Add error messages to runnable filtered_issues = issues.reject(&:filtered) (runnable, filtered_issues, message_prefix:) if validator_response_details&.concat(issues) # 6. Return validity filtered_issues.none? { |issue| issue.severity == 'error' } rescue Inferno::Exceptions::ErrorInValidatorException raise rescue StandardError => e runnable.('error', e.) raise Inferno::Exceptions::ErrorInValidatorException, 'Error occurred in the validator. Review Messages tab or validator service logs for more information.' end |
#conforms_to_logical_model?(object, model_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) ⇒ Boolean
Validate a FHIR resource and determine if it's valid. Adds validation messages to the runnable if add_messages_to_runnable is true.
302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 302 def conforms_to_logical_model?(object, model_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) unless model_url.present? raise Inferno::Exceptions::TestSuiteImplementationException.new( 'Logical Model Validation', 'The profile of the logical model must be provided.' ) end unless object.present? if runnable.(:error, "#{message_prefix}No object to check for conformance.") end return false end unless object.is_a?(Hash) raise Inferno::Exceptions::TestSuiteImplementationException.new( 'Logical Model Validation', "Expected a Hash, got a #{object.class}." ) end conformant?(object, model_url, runnable, add_messages_to_runnable:, message_prefix:, validator_response_details:) end |
#contained_resource_profile_issue?(base_issue) ⇒ Boolean
Checks if a base issue should be processed for contained resource filtering
732 733 734 735 736 737 738 739 740 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 732 def contained_resource_profile_issue?(base_issue) return false if base_issue.filtered # Skip if already filtered = base_issue.raw_issue['messageId'] return false unless == 'Reference_REF_CantMatchChoice' return false unless base_issue.severity == 'error' || base_issue.severity == 'warning' true end |
#convert_raw_issue_to_validator_issue(raw_issue, target) ⇒ ValidatorIssue
Converts a single raw issue hash to a ValidatorIssue object. Recursively processes sliceInfo if present.
474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 474 def convert_raw_issue_to_validator_issue(raw_issue, target) # Recursively process sliceInfo slice_info = [] if raw_issue['sliceInfo']&.any? slice_info = raw_issue['sliceInfo'].map do |slice_issue| convert_raw_issue_to_validator_issue(slice_issue, target) end end ValidatorIssue.new( raw_issue: raw_issue, target: target, slice_info: slice_info, filtered: false ) end |
#debug_logging_enabled? ⇒ Boolean
67 68 69 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 67 def debug_logging_enabled? ENV.fetch(VALIDATOR_DEBUG_LOGGING_ENV_VAR, nil).present? end |
#exclude_message {|message| ... } ⇒ Object
Filter out unwanted validation messages. Any messages for which the block evalutates to a truthy value will be excluded.
295 296 297 298 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 295 def (&block) = block if block_given? end |
#exclude_unresolved_url_message ⇒ Proc
Filter for excluding unresolved URL validation messages
671 672 673 674 675 676 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 671 def ||= proc do || ..match?(/\A\S+: [^:]+: URL value '.*' does not resolve/) || ..match?(/\A\S+: [^:]+: No definition could be found for URL value '.*'/) end end |
#expansion_parameters(value = nil) ⇒ Object
Set the expansion parameters to be sent with each validation request. This configures how the validator's terminology engine expands value sets during validation (e.g. designation preferences, forcing the use of the latest terminology versions, etc.). The content is sent inline with every validation request made by this validator, since the validator does not have access to Inferno's filesystem.
Accepts either a Hash containing the contents of a FHIR Parameters resource, or a String path to a file (JSON or XML) containing one. The file is read once, the first time it's needed.
If never set explicitly, this falls back to the
FHIR_RESOURCE_VALIDATOR_EXPANSION_PARAMETERS environment
variable, if present. This allows a shared set of expansion
parameters to be configured once for every test kit that uses a
given validator instance, while still letting individual test
kits opt out or override it by calling this method themselves.
The environment variable's content is treated as raw JSON if it
starts with {, and otherwise as a file path.
182 183 184 185 186 187 188 189 190 191 192 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 182 def expansion_parameters(value = nil) if value @expansion_parameters = build_expansion_parameters(value) elsif !@expansion_parameters_resolved env_value = ENV.fetch(EXPANSION_PARAMETERS_ENV_VAR, nil) @expansion_parameters = build_expansion_parameters_from_env(env_value) if env_value end @expansion_parameters_resolved = true @expansion_parameters end |
#filter_contained_resource(issues, base_issue, base_index) ⇒ Object
Filters Reference_REF_CantMatchChoice errors for contained resources. If a resource matches at least one profile (all slices filtered), marks the base error as filtered.
716 717 718 719 720 721 722 723 724 725 726 727 728 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 716 def filter_contained_resource(issues, base_issue, base_index) return unless contained_resource_profile_issue?(base_issue) base_location = base_issue.location profile_detail_issues = find_following_profile_details_issues(issues, base_index, base_location) return if profile_detail_issues.empty? return unless at_least_one_profile_without_errors?(profile_detail_issues) base_issue.filtered = true # Also filter all the Details messages profile_detail_issues.each { |details_issue| details_issue.filtered = true } end |
#filter_individual_messages(issues) ⇒ Object
Recursively filters validation issues by setting the filtered flag. Applies filtering to both the issue itself and all nested slice_info.
644 645 646 647 648 649 650 651 652 653 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 644 def (issues) issues.each do |issue| # Create a mock message entity to check filtering rules = Entities::Message.new(type: issue.severity, message: issue.) issue.filtered = () # Recursively filter slice_info (issue.slice_info) if issue.slice_info.any? end end |
#find_following_profile_details_issues(issues, start_index, base_location) ⇒ Array<ValidatorIssue>
Finds consecutive Details messages following a base issue at the same location.
758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 758 def find_following_profile_details_issues(issues, start_index, base_location) details_issues = [] index = start_index + 1 while index < issues.length issue = issues[index] # Check if this is a Details message for the same location break unless issue..include?('Details for #') && issue.location == base_location details_issues << issue index += 1 end details_issues end |
#get_issues_from_validator_response(response, target) ⇒ Array<ValidatorIssue>
Converts raw validator response into a list of ValidatorIssue objects. Recursively processes slice information.
450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 450 def get_issues_from_validator_response(response, target) response_body = remove_invalid_characters(response.body) response_hash = JSON.parse(response_body) if response_hash['sessionId'].present? && response_hash['sessionId'] != @session_id validator_session_repo.save(test_suite_id:, validator_session_id: response_hash['sessionId'], validator_name: name.to_s, suite_options: requirements) @session_id = response_hash['sessionId'] end raw_issues = response_hash.dig('outcomes', 0, 'issues') || [] raw_issues.map do |raw_issue| convert_raw_issue_to_validator_issue(raw_issue, target) end end |
#get_raw_validator_content(target, profile_url, runnable) ⇒ Faraday::Response
Gets raw content from validator including error handling
403 404 405 406 407 408 409 410 411 412 413 414 415 416 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 403 def get_raw_validator_content(target, profile_url, runnable) response = call_validator(target, profile_url) unless response.status == 200 raise Inferno::Exceptions::ErrorInValidatorException, 'Error occurred in the validator. Review Messages tab or validator service logs for more information.' end response rescue StandardError => e runnable.('error', e.) Application[:logger].error(e.) raise Inferno::Exceptions::ErrorInValidatorException, (e) end |
#igs(*validator_igs) ⇒ Object
Set the IGs that the validator will need to load
86 87 88 89 90 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 86 def igs(*validator_igs) validation_context(igs: validator_igs) if validator_igs.any? validation_context.igs end |
#issue_summary(issue) ⇒ Hash
Recursively builds a loggable summary of a validation issue, including nested slice_info, without any resource content.
535 536 537 538 539 540 541 542 543 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 535 def issue_summary(issue) { severity: issue.severity, location: issue.location, message: issue., filtered: issue.filtered, slice_info: issue.slice_info.any? ? issue.slice_info.map { |nested| issue_summary(nested) } : nil }.compact end |
#join_additional_validation_messages(issues, target, profile_url) ⇒ Array<ValidatorIssue>
Joins additional validation messages to the issues list
594 595 596 597 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 594 def (issues, target, profile_url) additional_issues = (target, profile_url) issues + additional_issues end |
#log_validation_result(profile_url, issues, runnable) ⇒ Object
Logs the validationContext and expansionParameters sent with a request together with the resulting issues (including which were filtered out) in a single entry, tagged with enough context to trace it back to the validator definition and triggering test run.
Deliberately omits the resource content itself (sent separately as
filesToValidate): only the small, non-PHI-bearing
validationContext and expansionParameters are logged, not the full
request body.
515 516 517 518 519 520 521 522 523 524 525 526 527 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 515 def log_validation_result(profile_url, issues, runnable) payload = { validator_name: name, test_suite_id: test_suite_id, test_session_id: runnable.respond_to?(:test_session_id) ? runnable.test_session_id : nil, test_id: runnable.id, validation_context: build_validation_context(profile_url), expansion_parameters:, issues: issues.map { |issue| issue_summary(issue) } }.compact Application[:logger].info("FHIR validation result: #{payload.to_json}") end |
#mark_issues_for_filtering(issues) ⇒ Object
Marks validation issues for filtering by setting the filtered flag on issues that should be excluded. Recursively marks issues in slice_info.
604 605 606 607 608 609 610 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 604 def mark_issues_for_filtering(issues) # Recursively mark all issues for filtering (issues) # Perform conditional filtering based on special cases apply_relationship_filters(issues) end |
#perform_additional_validation {|resource, profile_url| ... } ⇒ Object
Perform validation steps in addition to FHIR validation.
283 284 285 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 283 def perform_additional_validation(&block) additional_validations << block end |
#remove_invalid_characters(string) ⇒ String
Removes invalid characters from a string to prepare for JSON parsing
583 584 585 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 583 def remove_invalid_characters(string) string.gsub(/[^[:print:]\r\n]+/, '') end |
#resource_is_valid?(resource, profile_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) ⇒ Boolean
Validate a FHIR resource and determine if it's valid. Adds validation messages to the runnable if add_messages_to_runnable is true.
344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 344 def resource_is_valid?(resource, profile_url, runnable, add_messages_to_runnable: true, message_prefix: '', validator_response_details: nil) unless resource.present? runnable.(:error, "#{message_prefix}No resource to validate.") if return false end unless resource.is_a?(FHIR::Model) raise Inferno::Exceptions::TestSuiteImplementationException.new( 'FHIR Resource Validation', "Expected a FHIR::Model, got a #{resource.class}." ) end profile_url ||= FHIR::Definitions.resource_definition(resource.resourceType).url conformant?(resource, profile_url, runnable, add_messages_to_runnable:, message_prefix:, validator_response_details:) end |
#should_filter_message?(message) ⇒ Boolean
Determines if a message should be filtered based on exclusion rules. Applies both the unresolved URL filter and any custom exclude_message filter.
661 662 663 664 665 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 661 def () should_filter = .call() || &.call() should_filter || false end |
#tx_log ⇒ Object
237 238 239 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 237 def tx_log ENV.fetch(TX_LOG_ENV_VAR, nil).presence end |
#url(validator_url = nil) ⇒ Object
Set the url of the validator service
74 75 76 77 78 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 74 def url(validator_url = nil) @url = validator_url if validator_url @url ||= ENV.fetch('FHIR_RESOURCE_VALIDATOR_URL') @url end |
#validate(target, profile_url) ⇒ String
Post an object to the validation service for validating. Returns the raw validator response body.
552 553 554 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 552 def validate(target, profile_url) call_validator(target, profile_url).body end |
#validation_context(definition = nil) ⇒ Object Also known as: cli_context
Set the validationContext used as part of each validation request. Fields may be passed as either a Hash or block. Note that all fields included here will be sent directly in requests, there is no check that the fields are correct.
120 121 122 123 124 125 126 127 128 129 130 131 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 120 def validation_context(definition = nil, &) if @validation_context if definition @validation_context.definition.merge!(definition.deep_symbolize_keys) elsif block_given? @validation_context.instance_eval(&) end else @validation_context = ValidationContext.new(definition || {}, &) end @validation_context end |
#validator_error_message(error) ⇒ String
Add a specific error message for specific network problems to help the user
561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 561 def (error) case error when Faraday::ConnectionFailed "Connection failed to validator at #{url}." when Faraday::TimeoutError "Timeout while connecting to validator at #{url}." when Faraday::SSLError "SSL error connecting to validator at #{url}." when Faraday::ClientError # these are 400s "Client error (4xx) connecting to validator at #{url}." when Faraday::ServerError # these are 500s "Server error (5xx) from validator at #{url}." else "Unable to connect to validator at #{url}." end end |
#validator_session_repo ⇒ Object
54 55 56 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 54 def validator_session_repo @validator_session_repo ||= Inferno::Repositories::ValidatorSessions.new end |
#warm_up(target, profile_url) ⇒ Object
Warm up the validator session by sending a test validation request. This initializes the validator session and persists it for future use.
431 432 433 434 435 436 437 438 439 440 441 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 431 def warm_up(target, profile_url) response_body = validate(target, profile_url) res = JSON.parse(response_body) session_id = res['sessionId'] validator_session_repo.save(test_suite_id:, validator_session_id: session_id, validator_name: name.to_s, suite_options: requirements) self.session_id = session_id rescue JSON::ParserError Application[:logger] .error("Validator warm_up - error unexpected response format from validator: #{response_body}") end |
#wrap_target_for_hl7_wrapper(target, profile_url) ⇒ Object
776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 |
# File 'lib/inferno/dsl/fhir_resource_validation.rb', line 776 def wrap_target_for_hl7_wrapper(target, profile_url) validator_session_id = validator_session_repo.find_validator_session_id(test_suite_id, name.to_s, requirements) @session_id = validator_session_id if validator_session_id # HL7 Validator Core 6.5.19+ renamed `cliContext` to `validationContext`. # This allows backward compatibility until the validator-wrapper is updated. context_key = Feature.use_validation_context_key? ? :validationContext : :cliContext file_contents = if target.is_a?(Hash) target.to_json else target.source_contents end wrapped_resource = { context_key => build_validation_context(profile_url), filesToValidate: [ { fileName: "#{profile_url.split('/').last}.json", fileContent: file_contents, fileType: 'json' } ], sessionId: @session_id } wrapped_resource[:expansionParameters] = expansion_parameters if expansion_parameters wrapped_resource.to_json end |