Class: HTS::Bam::Pileup::PileupColumn

Inherits:

Struct

• Object
• Struct
• HTS::Bam::Pileup::PileupColumn

Defined in:

lib/hts/bam/pileup.rb

Overview

A column at a reference position with pileup alignments

Instance Attribute Summary

• #alignments ⇒ Object

  Returns the value of attribute alignments.

• #pos ⇒ Object

  Returns the value of attribute pos.

• #tid ⇒ Object

  Returns the value of attribute tid.

Instance Method Summary

• #depth ⇒ Object

Instance Attribute Details

#alignments ⇒ Object

Returns the value of attribute alignments

Returns:

• (Object) —

  the current value of alignments

# File 'lib/hts/bam/pileup.rb', line 26

def alignments
  @alignments
end

#pos ⇒ Object

Returns the value of attribute pos

Returns:

• (Object) —

  the current value of pos

# File 'lib/hts/bam/pileup.rb', line 26

def pos
  @pos
end

#tid ⇒ Object

Returns the value of attribute tid

Returns:

• (Object) —

  the current value of tid

# File 'lib/hts/bam/pileup.rb', line 26

def tid
  @tid
end

Instance Method Details

#depth ⇒ Object

# File 'lib/hts/bam/pileup.rb', line 27

def depth
  alignments.length
end