Class: Alignment

Inherits:
Object
  • Object
show all
Defined in:
lib/hts/bam.rb

Class Method Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize ⇒ Alignment

Returns a new instance of Alignment.



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# File 'lib/hts/bam.rb', line 21

def initialize; end

Class Method Details

.rom_sam_str ⇒ Object 



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# File 'lib/hts/bam.rb', line 23

def self.rom_sam_str; end

Instance Method Details

#base_qualities ⇒ Object 



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# File 'lib/hts/bam.rb', line 39

def base_qualities; end

#cigar ⇒ Object 



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# File 'lib/hts/bam.rb', line 49

def cigar; end

#flag ⇒ Object 



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# File 'lib/hts/bam.rb', line 59

def flag; end

#flag_str ⇒ Object 



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# File 'lib/hts/bam.rb', line 57

def flag_str; end

#inspect ⇒ Object

def eql? def hash



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# File 'lib/hts/bam.rb', line 64

def inspect; end

#isize ⇒ Object 



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# File 'lib/hts/bam.rb', line 45

def isize; end

#mapping_quality ⇒ Object 



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# File 'lib/hts/bam.rb', line 47

def mapping_quality; end

#pnext ⇒ Object 



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# File 'lib/hts/bam.rb', line 33

def pnext; end

#pos ⇒ Object 



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# File 'lib/hts/bam.rb', line 41

def pos; end

#pos= ⇒ Object 



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# File 'lib/hts/bam.rb', line 43

def pos=; end

#qlen ⇒ Object 



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# File 'lib/hts/bam.rb', line 51

def qlen; end

#qname ⇒ Object 



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# File 'lib/hts/bam.rb', line 27

def qname; end

#qname= ⇒ Object 



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# File 'lib/hts/bam.rb', line 29

def qname=; end

#rlen ⇒ Object 



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# File 'lib/hts/bam.rb', line 53

def rlen; end

#rname ⇒ Object 



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# File 'lib/hts/bam.rb', line 35

def rname; end

#rnext ⇒ Object 



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# File 'lib/hts/bam.rb', line 31

def rnext; end

#seqs ⇒ Object 



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# File 'lib/hts/bam.rb', line 55

def seqs; end

#strand ⇒ Object 



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# File 'lib/hts/bam.rb', line 37

def strand; end

#tags ⇒ Object 



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# File 'lib/hts/bam.rb', line 25

def tags; end

#to_s ⇒ Object 



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# File 'lib/hts/bam.rb', line 66

def to_s; end