Class: Google::Apis::GenomicsV1::GenomicsService
- Inherits:
-
Core::BaseService
- Object
- Core::BaseService
- Google::Apis::GenomicsV1::GenomicsService
- Defined in:
- generated/google/apis/genomics_v1/service.rb
Overview
Genomics API
Stores, processes, explores and shares genomic data.
Instance Attribute Summary collapse
-
#key ⇒ String
API key.
-
#quota_user ⇒ String
Available to use for quota purposes for server-side applications.
Attributes inherited from Core::BaseService
#authorization, #base_path, #batch_path, #client, #client_options, #request_options, #root_url, #upload_path
Instance Method Summary collapse
-
#batch_create_annotations(batch_create_annotations_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::BatchCreateAnnotationsResponse
Creates one or more new annotations atomically.
-
#cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Starts asynchronous cancellation on a long-running operation.
-
#create_annotation(annotation_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Annotation
Creates a new annotation.
-
#create_annotation_set(annotation_set_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::AnnotationSet
Creates a new annotation set.
-
#create_call_set(call_set_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::CallSet
Creates a new call set.
-
#create_dataset(dataset_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Creates a new dataset.
-
#create_variant(variant_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Variant
Creates a new variant.
-
#create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::VariantSet
Creates a new variant set.
-
#delete_annotation(annotation_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes an annotation.
-
#delete_annotationset(annotation_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes an annotation set.
-
#delete_call_set(call_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a call set.
-
#delete_dataset(dataset_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a dataset and all of its contents (all read group sets, reference sets, variant sets, call sets, annotation sets, etc.) This is reversible (up to one week after the deletion) via the datasets.undelete operation.
-
#delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a read group set.
-
#delete_variant(variant_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a variant.
-
#delete_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a variant set including all variants, call sets, and calls within.
-
#export_read_group_sets(read_group_set_id, export_read_group_set_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Exports a read group set to a BAM file in Google Cloud Storage.
-
#export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Exports variant set data to an external destination.
-
#get_annotation(annotation_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Annotation
Gets an annotation.
-
#get_annotation_set(annotation_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::AnnotationSet
Gets an annotation set.
-
#get_call_set(call_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::CallSet
Gets a call set by ID.
-
#get_dataset(dataset_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Gets a dataset by ID.
-
#get_dataset_iam_policy(resource, get_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Policy
Gets the access control policy for the dataset.
-
#get_operation(name, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Gets the latest state of a long-running operation.
-
#get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ReadGroupSet
Gets a read group set by ID.
-
#get_reference(reference_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Reference
Gets a reference.
-
#get_reference_set(reference_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ReferenceSet
Gets a reference set.
-
#get_variant(variant_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Variant
Gets a variant by ID.
-
#get_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::VariantSet
Gets a variant set by ID.
-
#import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Creates read group sets by asynchronously importing the provided information.
-
#import_variants(import_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Creates variant data by asynchronously importing the provided information.
-
#initialize ⇒ GenomicsService
constructor
A new instance of GenomicsService.
-
#list_coverage_buckets(read_group_set_id, reference_name: nil, start: nil, end_: nil, target_bucket_width: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListCoverageBucketsResponse
Lists fixed width coverage buckets for a read group set, each of which correspond to a range of a reference sequence.
-
#list_datasets(project_id: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListDatasetsResponse
Lists datasets within a project.
-
#list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListOperationsResponse
Lists operations that match the specified filter in the request.
-
#list_reference_bases(reference_id, start_position: nil, end_position: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListBasesResponse
Lists the bases in a reference, optionally restricted to a range.
-
#merge_variants(merge_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Merges the given variants with existing variants.
-
#patch_call_set(call_set_id, call_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::CallSet
Updates a call set.
-
#patch_dataset(dataset_id, dataset_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Updates a dataset.
-
#patch_read_group_set(read_group_set_id, read_group_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ReadGroupSet
Updates a read group set.
-
#patch_variant(variant_id, variant_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Variant
Updates a variant.
-
#patch_variantset(variant_set_id, variant_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::VariantSet
Updates a variant set using patch semantics.
-
#search_annotations(search_annotations_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchAnnotationsResponse
Searches for annotations that match the given criteria.
-
#search_annotationset_annotation_sets(search_annotation_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchAnnotationSetsResponse
Searches for annotation sets that match the given criteria.
-
#search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchCallSetsResponse
Gets a list of call sets matching the criteria.
-
#search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReadGroupSetsResponse
Searches for read group sets matching the criteria.
-
#search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReadsResponse
Gets a list of reads for one or more read group sets.
-
#search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReferenceSetsResponse
Searches for reference sets which match the given criteria.
-
#search_references(search_references_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReferencesResponse
Searches for references which match the given criteria.
-
#search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchVariantSetsResponse
Returns a list of all variant sets matching search criteria.
-
#search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchVariantsResponse
Gets a list of variants matching the criteria.
-
#set_dataset_iam_policy(resource, set_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Policy
Sets the access control policy on the specified dataset.
-
#stream_reads(stream_reads_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::StreamReadsResponse
Returns a stream of all the reads matching the search request, ordered by reference name, position, and ID.
-
#stream_variants(stream_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::StreamVariantsResponse
Returns a stream of all the variants matching the search request, ordered by reference name, position, and ID.
-
#test_dataset_iam_permissions(resource, test_iam_permissions_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::TestIamPermissionsResponse
Returns permissions that a caller has on the specified resource.
-
#undelete_dataset(dataset_id, undelete_dataset_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Undeletes a dataset by restoring a dataset which was deleted via this API.
-
#update_annotation(annotation_id, annotation_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Annotation
Updates an annotation.
-
#update_annotationset(annotation_set_id, annotation_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::AnnotationSet
Updates an annotation set.
Methods inherited from Core::BaseService
#batch, #batch_upload, #fetch_all, #http
Constructor Details
#initialize ⇒ GenomicsService
Returns a new instance of GenomicsService.
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# File 'generated/google/apis/genomics_v1/service.rb', line 45 def initialize super('https://genomics.googleapis.com/', '') end |
Instance Attribute Details
#key ⇒ String
Returns API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
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# File 'generated/google/apis/genomics_v1/service.rb', line 38 def key @key end |
#quota_user ⇒ String
Returns Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
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# File 'generated/google/apis/genomics_v1/service.rb', line 43 def quota_user @quota_user end |
Instance Method Details
#batch_create_annotations(batch_create_annotations_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::BatchCreateAnnotationsResponse
Creates one or more new annotations atomically. All annotations must belong to the same annotation set. Caller must have WRITE permission for this annotation set. For optimal performance, batch positionally adjacent annotations together. If the request has a systemic issue, such as an attempt to write to an inaccessible annotation set, the entire RPC will fail accordingly. For lesser data issues, when possible an error will be isolated to the corresponding batch entry in the response; the remaining well formed annotations will be created normally. For details on the requirements for each individual annotation resource, see CreateAnnotation.
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# File 'generated/google/apis/genomics_v1/service.rb', line 281 def batch_create_annotations(batch_create_annotations_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/annotations:batchCreate', ) command.request_representation = Google::Apis::GenomicsV1::BatchCreateAnnotationsRequest::Representation command.request_object = batch_create_annotations_request_object command.response_representation = Google::Apis::GenomicsV1::BatchCreateAnnotationsResponse::Representation command.response_class = Google::Apis::GenomicsV1::BatchCreateAnnotationsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation.
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# File 'generated/google/apis/genomics_v1/service.rb', line 858 def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/{+name}:cancel', ) command.request_representation = Google::Apis::GenomicsV1::CancelOperationRequest::Representation command.request_object = cancel_operation_request_object command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['name'] = name unless name.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#create_annotation(annotation_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Annotation
Creates a new annotation. Caller must have WRITE permission for the associated annotation set. The following fields are required: * annotationSetId * referenceName or referenceId ### Transcripts For annotations of type TRANSCRIPT, the following fields of transcript must be provided: * exons.start
- exons.end All other fields may be optionally specified, unless documented as
being server-generated (for example, the
id
field). The annotated range must be no longer than 100Mbp (mega base pairs). See the Annotation resource for additional restrictions on each field.
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# File 'generated/google/apis/genomics_v1/service.rb', line 243 def create_annotation(annotation_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/annotations', ) command.request_representation = Google::Apis::GenomicsV1::Annotation::Representation command.request_object = annotation_object command.response_representation = Google::Apis::GenomicsV1::Annotation::Representation command.response_class = Google::Apis::GenomicsV1::Annotation command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#create_annotation_set(annotation_set_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::AnnotationSet
Creates a new annotation set. Caller must have WRITE permission for the
associated dataset. The following fields are required: * datasetId *
referenceSetId All other fields may be optionally specified, unless documented
as being server-generated (for example, the id
field).
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# File 'generated/google/apis/genomics_v1/service.rb', line 71 def create_annotation_set(annotation_set_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/annotationsets', ) command.request_representation = Google::Apis::GenomicsV1::AnnotationSet::Representation command.request_object = annotation_set_object command.response_representation = Google::Apis::GenomicsV1::AnnotationSet::Representation command.response_class = Google::Apis::GenomicsV1::AnnotationSet command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#create_call_set(call_set_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::CallSet
Creates a new call set. For the definitions of call sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1984 def create_call_set(call_set_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/callsets', ) command.request_representation = Google::Apis::GenomicsV1::CallSet::Representation command.request_object = call_set_object command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation command.response_class = Google::Apis::GenomicsV1::CallSet command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#create_dataset(dataset_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Creates a new dataset. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 491 def create_dataset(dataset_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/datasets', ) command.request_representation = Google::Apis::GenomicsV1::Dataset::Representation command.request_object = dataset_object command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation command.response_class = Google::Apis::GenomicsV1::Dataset command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#create_variant(variant_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Variant
Creates a new variant. For the definitions of variants and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1518 def create_variant(variant_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variants', ) command.request_representation = Google::Apis::GenomicsV1::Variant::Representation command.request_object = variant_object command.response_representation = Google::Apis::GenomicsV1::Variant::Representation command.response_class = Google::Apis::GenomicsV1::Variant command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::VariantSet
Creates a new variant set. For the definitions of variant sets and other
genomics resources, see Fundamentals of Google Genomics The provided variant set must
have a valid datasetId
set - all other fields are optional. Note that the
id
field will be ignored, as this is assigned by the server.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1743 def create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variantsets', ) command.request_representation = Google::Apis::GenomicsV1::VariantSet::Representation command.request_object = variant_set_object command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation command.response_class = Google::Apis::GenomicsV1::VariantSet command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_annotation(annotation_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes an annotation. Caller must have WRITE permission for the associated annotation set.
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# File 'generated/google/apis/genomics_v1/service.rb', line 383 def delete_annotation(annotation_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/annotations/{annotationId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['annotationId'] = annotation_id unless annotation_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_annotationset(annotation_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes an annotation set. Caller must have WRITE permission for the associated annotation set.
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# File 'generated/google/apis/genomics_v1/service.rb', line 173 def delete_annotationset(annotation_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/annotationsets/{annotationSetId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_call_set(call_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a call set. For the definitions of call sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 2057 def delete_call_set(call_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/callsets/{callSetId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['callSetId'] = call_set_id unless call_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_dataset(dataset_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a dataset and all of its contents (all read group sets, reference sets, variant sets, call sets, annotation sets, etc.) This is reversible (up to one week after the deletion) via the datasets.undelete operation. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 599 def delete_dataset(dataset_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/datasets/{datasetId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['datasetId'] = dataset_id unless dataset_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a read group set. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1048 def delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/readgroupsets/{readGroupSetId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_variant(variant_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a variant. For the definitions of variants and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1592 def delete_variant(variant_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/variants/{variantId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['variantId'] = variant_id unless variant_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#delete_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Deletes a variant set including all variants, call sets, and calls within. This is not reversible. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1879 def delete_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:delete, 'v1/variantsets/{variantSetId}', ) command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.params['variantSetId'] = variant_set_id unless variant_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#export_read_group_sets(read_group_set_id, export_read_group_set_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Exports a read group set to a BAM file in Google Cloud Storage. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics Note that currently there may be some differences between exported BAM files and the original BAM file at the time of import. See ImportReadGroupSets for caveats.
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# File 'generated/google/apis/genomics_v1/service.rb', line 937 def export_read_group_sets(read_group_set_id, export_read_group_set_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/readgroupsets/{readGroupSetId}:export', ) command.request_representation = Google::Apis::GenomicsV1::ExportReadGroupSetRequest::Representation command.request_object = export_read_group_set_request_object command.response_representation = Google::Apis::GenomicsV1::Operation::Representation command.response_class = Google::Apis::GenomicsV1::Operation command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Exports variant set data to an external destination. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1778 def export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variantsets/{variantSetId}:export', ) command.request_representation = Google::Apis::GenomicsV1::ExportVariantSetRequest::Representation command.request_object = export_variant_set_request_object command.response_representation = Google::Apis::GenomicsV1::Operation::Representation command.response_class = Google::Apis::GenomicsV1::Operation command.params['variantSetId'] = variant_set_id unless variant_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_annotation(annotation_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Annotation
Gets an annotation. Caller must have READ permission for the associated annotation set.
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# File 'generated/google/apis/genomics_v1/service.rb', line 313 def get_annotation(annotation_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/annotations/{annotationId}', ) command.response_representation = Google::Apis::GenomicsV1::Annotation::Representation command.response_class = Google::Apis::GenomicsV1::Annotation command.params['annotationId'] = annotation_id unless annotation_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_annotation_set(annotation_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::AnnotationSet
Gets an annotation set. Caller must have READ permission for the associated dataset.
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# File 'generated/google/apis/genomics_v1/service.rb', line 103 def get_annotation_set(annotation_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/annotationsets/{annotationSetId}', ) command.response_representation = Google::Apis::GenomicsV1::AnnotationSet::Representation command.response_class = Google::Apis::GenomicsV1::AnnotationSet command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_call_set(call_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::CallSet
Gets a call set by ID. For the definitions of call sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 2089 def get_call_set(call_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/callsets/{callSetId}', ) command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation command.response_class = Google::Apis::GenomicsV1::CallSet command.params['callSetId'] = call_set_id unless call_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_dataset(dataset_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Gets a dataset by ID. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 524 def get_dataset(dataset_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/datasets/{datasetId}', ) command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation command.response_class = Google::Apis::GenomicsV1::Dataset command.params['datasetId'] = dataset_id unless dataset_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_dataset_iam_policy(resource, get_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Policy
Gets the access control policy for the dataset. This is empty if the policy or resource does not exist. See Getting a Policy for more information. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 709 def get_dataset_iam_policy(resource, get_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/{+resource}:getIamPolicy', ) command.request_representation = Google::Apis::GenomicsV1::GetIamPolicyRequest::Representation command.request_object = get_iam_policy_request_object command.response_representation = Google::Apis::GenomicsV1::Policy::Representation command.response_class = Google::Apis::GenomicsV1::Policy command.params['resource'] = resource unless resource.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_operation(name, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service.
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# File 'generated/google/apis/genomics_v1/service.rb', line 779 def get_operation(name, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/{+name}', ) command.response_representation = Google::Apis::GenomicsV1::Operation::Representation command.response_class = Google::Apis::GenomicsV1::Operation command.params['name'] = name unless name.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ReadGroupSet
Gets a read group set by ID. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1080 def get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/readgroupsets/{readGroupSetId}', ) command.response_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation command.response_class = Google::Apis::GenomicsV1::ReadGroupSet command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_reference(reference_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Reference
Gets a reference. For the definitions of references and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi. getReference.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1361 def get_reference(reference_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/references/{referenceId}', ) command.response_representation = Google::Apis::GenomicsV1::Reference::Representation command.response_class = Google::Apis::GenomicsV1::Reference command.params['referenceId'] = reference_id unless reference_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_reference_set(reference_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ReferenceSet
Gets a reference set. For the definitions of references and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi. getReferenceSet.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1293 def get_reference_set(reference_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/referencesets/{referenceSetId}', ) command.response_representation = Google::Apis::GenomicsV1::ReferenceSet::Representation command.response_class = Google::Apis::GenomicsV1::ReferenceSet command.params['referenceSetId'] = reference_set_id unless reference_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_variant(variant_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Variant
Gets a variant by ID. For the definitions of variants and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1624 def get_variant(variant_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/variants/{variantId}', ) command.response_representation = Google::Apis::GenomicsV1::Variant::Representation command.response_class = Google::Apis::GenomicsV1::Variant command.params['variantId'] = variant_id unless variant_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#get_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::VariantSet
Gets a variant set by ID. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1812 def get_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/variantsets/{variantSetId}', ) command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation command.response_class = Google::Apis::GenomicsV1::VariantSet command.params['variantSetId'] = variant_set_id unless variant_set_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Creates read group sets by asynchronously importing the provided information.
For the definitions of read group sets and other genomics resources, see
Fundamentals of Google Genomics The caller must have WRITE permissions to the
dataset. ## Notes on BAM
import - Tags will be converted to strings - tag types are not preserved -
Comments (@CO
) in the input file header will not be preserved - Original
header order of references (@SQ
) will not be preserved - Any reverse
stranded unmapped reads will be reverse complemented, and their qualities (
also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped reads will be
stripped of positional information (reference name and position)
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# File 'generated/google/apis/genomics_v1/service.rb', line 899 def import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/readgroupsets:import', ) command.request_representation = Google::Apis::GenomicsV1::ImportReadGroupSetsRequest::Representation command.request_object = import_read_group_sets_request_object command.response_representation = Google::Apis::GenomicsV1::Operation::Representation command.response_class = Google::Apis::GenomicsV1::Operation command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#import_variants(import_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Operation
Creates variant data by asynchronously importing the provided information. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics The variants for import will be merged with any existing variant that matches its reference sequence, start, end, reference bases, and alternative bases. If no such variant exists, a new one will be created. When variants are merged, the call information from the new variant is added to the existing variant, and Variant info fields are merged as specified in infoMergeConfig. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1452 def import_variants(import_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variants:import', ) command.request_representation = Google::Apis::GenomicsV1::ImportVariantsRequest::Representation command.request_object = import_variants_request_object command.response_representation = Google::Apis::GenomicsV1::Operation::Representation command.response_class = Google::Apis::GenomicsV1::Operation command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#list_coverage_buckets(read_group_set_id, reference_name: nil, start: nil, end_: nil, target_bucket_width: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListCoverageBucketsResponse
Lists fixed width coverage buckets for a read group set, each of which correspond to a range of a reference sequence. Each bucket summarizes coverage information across its corresponding genomic range. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics Coverage is defined as the number of reads which are aligned to a given base in the reference sequence. Coverage buckets are available at several precomputed bucket widths, enabling retrieval of various coverage 'zoom levels' . The caller must have READ permissions for the target read group set.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1142 def list_coverage_buckets(read_group_set_id, reference_name: nil, start: nil, end_: nil, target_bucket_width: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/readgroupsets/{readGroupSetId}/coveragebuckets', ) command.response_representation = Google::Apis::GenomicsV1::ListCoverageBucketsResponse::Representation command.response_class = Google::Apis::GenomicsV1::ListCoverageBucketsResponse command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil? command.query['referenceName'] = reference_name unless reference_name.nil? command.query['start'] = start unless start.nil? command.query['end'] = end_ unless end_.nil? command.query['targetBucketWidth'] = target_bucket_width unless target_bucket_width.nil? command.query['pageToken'] = page_token unless page_token.nil? command.query['pageSize'] = page_size unless page_size.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#list_datasets(project_id: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListDatasetsResponse
Lists datasets within a project. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 458 def list_datasets(project_id: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/datasets', ) command.response_representation = Google::Apis::GenomicsV1::ListDatasetsResponse::Representation command.response_class = Google::Apis::GenomicsV1::ListDatasetsResponse command.query['projectId'] = project_id unless project_id.nil? command.query['pageSize'] = page_size unless page_size.nil? command.query['pageToken'] = page_token unless page_token.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListOperationsResponse
Lists operations that match the specified filter in the request.
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# File 'generated/google/apis/genomics_v1/service.rb', line 821 def list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/{+name}', ) command.response_representation = Google::Apis::GenomicsV1::ListOperationsResponse::Representation command.response_class = Google::Apis::GenomicsV1::ListOperationsResponse command.params['name'] = name unless name.nil? command.query['filter'] = filter unless filter.nil? command.query['pageSize'] = page_size unless page_size.nil? command.query['pageToken'] = page_token unless page_token.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#list_reference_bases(reference_id, start_position: nil, end_position: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ListBasesResponse
Lists the bases in a reference, optionally restricted to a range. For the definitions of references and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.getReferenceBases.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1408 def list_reference_bases(reference_id, start_position: nil, end_position: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:get, 'v1/references/{referenceId}/bases', ) command.response_representation = Google::Apis::GenomicsV1::ListBasesResponse::Representation command.response_class = Google::Apis::GenomicsV1::ListBasesResponse command.params['referenceId'] = reference_id unless reference_id.nil? command.query['start'] = start_position unless start_position.nil? command.query['end'] = end_position unless end_position.nil? command.query['pageToken'] = page_token unless page_token.nil? command.query['pageSize'] = page_size unless page_size.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#merge_variants(merge_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Empty
Merges the given variants with existing variants. For the definitions of
variants and other genomics resources, see Fundamentals of Google Genomics Each
variant will be merged with an existing variant that matches its reference
sequence, start, end, reference bases, and alternative bases. If no such
variant exists, a new one will be created. When variants are merged, the call
information from the new variant is added to the existing variant. Variant
info fields are merged as specified in the infoMergeConfig field of the
MergeVariantsRequest. Please exercise caution when using this method! It is
easy to introduce mistakes in existing variants and difficult to back out of
them. For example, suppose you were trying to merge a new variant with an
existing one and both variants contain calls that belong to callsets with the
same callset ID. // Existing variant - irrelevant fields trimmed for clarity
"variantSetId": "10473108253681171589", "referenceName": "1", "start": "10582",
"referenceBases": "G", "alternateBases": [ "A" ], "calls": [
"callSetId": "
10473108253681171589-0", "callSetName": "CALLSET0", "genotype": [ 0, 1 ], ]
// New variant with conflicting call information "variantSetId": "
10473108253681171589", "referenceName": "1", "start": "10582", "referenceBases"
: "G", "alternateBases": [ "A" ], "calls": [
"callSetId": "
10473108253681171589-0", "callSetName": "CALLSET0", "genotype": [ 1, 1 ], ]
The resulting merged variant would overwrite the existing calls with those
from the new variant: "variantSetId": "10473108253681171589", "referenceName"
: "1", "start": "10582", "referenceBases": "G", "alternateBases": [ "A" ], "
calls": [
"callSetId": "10473108253681171589-0", "callSetName": "CALLSET0", "
genotype": [ 1, 1 ], ]
This may be the desired outcome, but it is up to
the user to determine if if that is indeed the case.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1678 def merge_variants(merge_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variants:merge', ) command.request_representation = Google::Apis::GenomicsV1::MergeVariantsRequest::Representation command.request_object = merge_variants_request_object command.response_representation = Google::Apis::GenomicsV1::Empty::Representation command.response_class = Google::Apis::GenomicsV1::Empty command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#patch_call_set(call_set_id, call_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::CallSet
Updates a call set. For the definitions of call sets and other genomics resources, see Fundamentals of Google Genomics This method supports patch semantics.
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# File 'generated/google/apis/genomics_v1/service.rb', line 2022 def patch_call_set(call_set_id, call_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:patch, 'v1/callsets/{callSetId}', ) command.request_representation = Google::Apis::GenomicsV1::CallSet::Representation command.request_object = call_set_object command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation command.response_class = Google::Apis::GenomicsV1::CallSet command.params['callSetId'] = call_set_id unless call_set_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#patch_dataset(dataset_id, dataset_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Updates a dataset. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics This method supports patch semantics.
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# File 'generated/google/apis/genomics_v1/service.rb', line 561 def patch_dataset(dataset_id, dataset_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:patch, 'v1/datasets/{datasetId}', ) command.request_representation = Google::Apis::GenomicsV1::Dataset::Representation command.request_object = dataset_object command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation command.response_class = Google::Apis::GenomicsV1::Dataset command.params['datasetId'] = dataset_id unless dataset_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#patch_read_group_set(read_group_set_id, read_group_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::ReadGroupSet
Updates a read group set. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics This method supports patch semantics.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1012 def patch_read_group_set(read_group_set_id, read_group_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:patch, 'v1/readgroupsets/{readGroupSetId}', ) command.request_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation command.request_object = read_group_set_object command.response_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation command.response_class = Google::Apis::GenomicsV1::ReadGroupSet command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#patch_variant(variant_id, variant_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Variant
Updates a variant. For the definitions of variants and other genomics resources, see Fundamentals of Google Genomics This method supports patch semantics. Returns the modified variant without its calls.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1557 def patch_variant(variant_id, variant_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:patch, 'v1/variants/{variantId}', ) command.request_representation = Google::Apis::GenomicsV1::Variant::Representation command.request_object = variant_object command.response_representation = Google::Apis::GenomicsV1::Variant::Representation command.response_class = Google::Apis::GenomicsV1::Variant command.params['variantId'] = variant_id unless variant_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#patch_variantset(variant_set_id, variant_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::VariantSet
Updates a variant set using patch semantics. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 1916 def patch_variantset(variant_set_id, variant_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:patch, 'v1/variantsets/{variantSetId}', ) command.request_representation = Google::Apis::GenomicsV1::VariantSet::Representation command.request_object = variant_set_object command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation command.response_class = Google::Apis::GenomicsV1::VariantSet command.params['variantSetId'] = variant_set_id unless variant_set_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_annotations(search_annotations_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchAnnotationsResponse
Searches for annotations that match the given criteria. Results are ordered by genomic coordinate (by reference sequence, then position). Annotations with equivalent genomic coordinates are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield annotations in the same order across their respective streams of paginated responses. Caller must have READ permission for the queried annotation sets.
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# File 'generated/google/apis/genomics_v1/service.rb', line 418 def search_annotations(search_annotations_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/annotations/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchAnnotationsRequest::Representation command.request_object = search_annotations_request_object command.response_representation = Google::Apis::GenomicsV1::SearchAnnotationsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchAnnotationsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_annotationset_annotation_sets(search_annotation_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchAnnotationSetsResponse
Searches for annotation sets that match the given criteria. Annotation sets are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield annotation sets in the same order across their respective streams of paginated responses. Caller must have READ permission for the queried datasets.
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# File 'generated/google/apis/genomics_v1/service.rb', line 206 def search_annotationset_annotation_sets(search_annotation_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/annotationsets/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchAnnotationSetsRequest::Representation command.request_object = search_annotation_sets_request_object command.response_representation = Google::Apis::GenomicsV1::SearchAnnotationSetsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchAnnotationSetsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchCallSetsResponse
Gets a list of call sets matching the criteria. For the definitions of call sets and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.searchCallSets.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1952 def search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/callsets/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchCallSetsRequest::Representation command.request_object = search_call_sets_request_object command.response_representation = Google::Apis::GenomicsV1::SearchCallSetsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchCallSetsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReadGroupSetsResponse
Searches for read group sets matching the criteria. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.searchReadGroupSets.
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# File 'generated/google/apis/genomics_v1/service.rb', line 972 def search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/readgroupsets/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchReadGroupSetsRequest::Representation command.request_object = search_read_group_sets_request_object command.response_representation = Google::Apis::GenomicsV1::SearchReadGroupSetsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchReadGroupSetsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReadsResponse
Gets a list of reads for one or more read group sets. For the definitions of read group sets and other genomics resources, see Fundamentals of Google Genomics Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested read group sets are aligned. If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only read group set IDs yields all reads in those read group sets, including unmapped reads. All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (by reference sequence, then position). Reads with equivalent genomic coordinates are returned in an unspecified order. This order is consistent, such that two queries for the same content (regardless of page size) yield reads in the same order across their respective streams of paginated responses. Implements GlobalAllianceApi. searchReads.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1192 def search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/reads/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchReadsRequest::Representation command.request_object = search_reads_request_object command.response_representation = Google::Apis::GenomicsV1::SearchReadsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchReadsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReferenceSetsResponse
Searches for reference sets which match the given criteria. For the definitions of references and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.searchReferenceSets
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# File 'generated/google/apis/genomics_v1/service.rb', line 1258 def search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/referencesets/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchReferenceSetsRequest::Representation command.request_object = search_reference_sets_request_object command.response_representation = Google::Apis::GenomicsV1::SearchReferenceSetsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchReferenceSetsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_references(search_references_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchReferencesResponse
Searches for references which match the given criteria. For the definitions of references and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.searchReferences.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1326 def search_references(search_references_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/references/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchReferencesRequest::Representation command.request_object = search_references_request_object command.response_representation = Google::Apis::GenomicsV1::SearchReferencesResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchReferencesResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchVariantSetsResponse
Returns a list of all variant sets matching search criteria. For the definitions of variant sets and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.searchVariantSets.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1845 def search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variantsets/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchVariantSetsRequest::Representation command.request_object = search_variant_sets_request_object command.response_representation = Google::Apis::GenomicsV1::SearchVariantSetsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchVariantSetsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::SearchVariantsResponse
Gets a list of variants matching the criteria. For the definitions of variants and other genomics resources, see Fundamentals of Google Genomics Implements GlobalAllianceApi.searchVariants.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1486 def search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variants/search', ) command.request_representation = Google::Apis::GenomicsV1::SearchVariantsRequest::Representation command.request_object = search_variants_request_object command.response_representation = Google::Apis::GenomicsV1::SearchVariantsResponse::Representation command.response_class = Google::Apis::GenomicsV1::SearchVariantsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#set_dataset_iam_policy(resource, set_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Policy
Sets the access control policy on the specified dataset. Replaces any existing policy. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics See Setting a Policy for more information.
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# File 'generated/google/apis/genomics_v1/service.rb', line 671 def set_dataset_iam_policy(resource, set_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/{+resource}:setIamPolicy', ) command.request_representation = Google::Apis::GenomicsV1::SetIamPolicyRequest::Representation command.request_object = set_iam_policy_request_object command.response_representation = Google::Apis::GenomicsV1::Policy::Representation command.response_class = Google::Apis::GenomicsV1::Policy command.params['resource'] = resource unless resource.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#stream_reads(stream_reads_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::StreamReadsResponse
Returns a stream of all the reads matching the search request, ordered by reference name, position, and ID.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1223 def stream_reads(stream_reads_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/reads:stream', ) command.request_representation = Google::Apis::GenomicsV1::StreamReadsRequest::Representation command.request_object = stream_reads_request_object command.response_representation = Google::Apis::GenomicsV1::StreamReadsResponse::Representation command.response_class = Google::Apis::GenomicsV1::StreamReadsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#stream_variants(stream_variants_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::StreamVariantsResponse
Returns a stream of all the variants matching the search request, ordered by reference name, position, and ID.
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# File 'generated/google/apis/genomics_v1/service.rb', line 1709 def stream_variants(stream_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/variants:stream', ) command.request_representation = Google::Apis::GenomicsV1::StreamVariantsRequest::Representation command.request_object = stream_variants_request_object command.response_representation = Google::Apis::GenomicsV1::StreamVariantsResponse::Representation command.response_class = Google::Apis::GenomicsV1::StreamVariantsResponse command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#test_dataset_iam_permissions(resource, test_iam_permissions_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::TestIamPermissionsResponse
Returns permissions that a caller has on the specified resource. See Testing Permissions for more information. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics
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# File 'generated/google/apis/genomics_v1/service.rb', line 746 def (resource, = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/{+resource}:testIamPermissions', ) command.request_representation = Google::Apis::GenomicsV1::TestIamPermissionsRequest::Representation command.request_object = command.response_representation = Google::Apis::GenomicsV1::TestIamPermissionsResponse::Representation command.response_class = Google::Apis::GenomicsV1::TestIamPermissionsResponse command.params['resource'] = resource unless resource.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#undelete_dataset(dataset_id, undelete_dataset_request_object = nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Dataset
Undeletes a dataset by restoring a dataset which was deleted via this API. For the definitions of datasets and other genomics resources, see Fundamentals of Google Genomics This operation is only possible for a week after the deletion occurred.
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# File 'generated/google/apis/genomics_v1/service.rb', line 634 def undelete_dataset(dataset_id, undelete_dataset_request_object = nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:post, 'v1/datasets/{datasetId}:undelete', ) command.request_representation = Google::Apis::GenomicsV1::UndeleteDatasetRequest::Representation command.request_object = undelete_dataset_request_object command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation command.response_class = Google::Apis::GenomicsV1::Dataset command.params['datasetId'] = dataset_id unless dataset_id.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#update_annotation(annotation_id, annotation_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::Annotation
Updates an annotation. Caller must have WRITE permission for the associated dataset.
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# File 'generated/google/apis/genomics_v1/service.rb', line 349 def update_annotation(annotation_id, annotation_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:put, 'v1/annotations/{annotationId}', ) command.request_representation = Google::Apis::GenomicsV1::Annotation::Representation command.request_object = annotation_object command.response_representation = Google::Apis::GenomicsV1::Annotation::Representation command.response_class = Google::Apis::GenomicsV1::Annotation command.params['annotationId'] = annotation_id unless annotation_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |
#update_annotationset(annotation_set_id, annotation_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil) {|result, err| ... } ⇒ Google::Apis::GenomicsV1::AnnotationSet
Updates an annotation set. The update must respect all mutability restrictions and other invariants described on the annotation set resource. Caller must have WRITE permission for the associated dataset.
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# File 'generated/google/apis/genomics_v1/service.rb', line 139 def update_annotationset(annotation_set_id, annotation_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block) command = make_simple_command(:put, 'v1/annotationsets/{annotationSetId}', ) command.request_representation = Google::Apis::GenomicsV1::AnnotationSet::Representation command.request_object = annotation_set_object command.response_representation = Google::Apis::GenomicsV1::AnnotationSet::Representation command.response_class = Google::Apis::GenomicsV1::AnnotationSet command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil? command.query['updateMask'] = update_mask unless update_mask.nil? command.query['fields'] = fields unless fields.nil? command.query['quotaUser'] = quota_user unless quota_user.nil? execute_or_queue_command(command, &block) end |