Class: Bio::FinishM::ScaffoldBreaker::Gap

Inherits:
Object
  • Object
show all
Defined in:
lib/assembly/scaffold_breaker.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Instance Attribute Details

#number ⇒ Object

Returns the value of attribute number.



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# File 'lib/assembly/scaffold_breaker.rb', line 81

def number
  @number
end

#scaffold ⇒ Object

Returns the value of attribute scaffold.



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# File 'lib/assembly/scaffold_breaker.rb', line 81

def scaffold
  @scaffold
end

#start ⇒ Object

Returns the value of attribute start.



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# File 'lib/assembly/scaffold_breaker.rb', line 81

def start
  @start
end

#stop ⇒ Object

Returns the value of attribute stop.



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# File 'lib/assembly/scaffold_breaker.rb', line 81

def stop
  @stop
end

Instance Method Details

#coords ⇒ Object 



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# File 'lib/assembly/scaffold_breaker.rb', line 83

def coords
  @scaffold.name+':'+(@start+1).to_s+'-'+(@stop).to_s
end

#length ⇒ Object

i.e. the number of N characters that would represent this gap



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# File 'lib/assembly/scaffold_breaker.rb', line 88

def length
  @stop-@start+1
end