Class: Bio::FinishM::ConnectionInterpreter::Probe

Inherits:
Object
  • Object
show all
Defined in:
lib/assembly/connection_interpreter.rb

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(settable_representation = nil) ⇒ Probe

Returns a new instance of Probe.



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# File 'lib/assembly/connection_interpreter.rb', line 275

def initialize(settable_representation=nil)
  unless settable_representation.nil?
    @sequence_index = settable_representation[0]
    @side = settable_representation[1]
  end
end

Instance Attribute Details

#sequence_index ⇒ Object

ID of the underlying sequence as an Integer



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# File 'lib/assembly/connection_interpreter.rb', line 273

def sequence_index
  @sequence_index
end

#side ⇒ Object

:start or :end



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# File 'lib/assembly/connection_interpreter.rb', line 272

def side
  @side
end

Instance Method Details

#companion ⇒ Object

Return a probe representing the other side of the contig



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# File 'lib/assembly/connection_interpreter.rb', line 292

def companion
  companion = Probe.new
  companion.sequence_index = @sequence_index
  companion.side = @side == :start ? :end : :start
  return companion
end

#to_s ⇒ Object 



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# File 'lib/assembly/connection_interpreter.rb', line 286

def to_s
  side = @side == :start ? 's' : 'e'
  "#{@sequence_index}#{side}"
end

#to_settable ⇒ Object 



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# File 'lib/assembly/connection_interpreter.rb', line 282

def to_settable
  [@sequence_index, @side]
end