Method: Bio::FinishM::GraphGenerator#parse_velvet_binary_reads

Defined in:
lib/assembly/graph_generator.rb

#parse_velvet_binary_reads(velvet_result_directory) ⇒ Object

Read in the reads from a velvet result



288
289
290
291
292
293
294
 
# File 'lib/assembly/graph_generator.rb', line 288

def parse_velvet_binary_reads(velvet_result_directory)
  sequences_file_path = File.join velvet_result_directory, 'CnyUnifiedSeq'
  log.info "Reading in the actual sequences of all reads from #{sequences_file_path}"
  sequences = Bio::Velvet::Underground::BinarySequenceStore.new sequences_file_path
  log.info "Read in #{sequences.length} sequences"
  return sequences
end