Class: FHIR::Sequence

Inherits:
Model
  • Object
show all
Includes:
Hashable, Json, Xml
Defined in:
lib/fhir/resources/Sequence.rb

Defined Under Namespace

Classes: Quality, ReferenceSeq, Repository, StructureVariant, Variant

Constant Summary collapse

SEARCH_PARAMS = 
["chromosome", "end", "patient", "start", "type"]
METADATA = 
{
  'id' => {'type'=>'id', 'path'=>'Sequence.id', 'min'=>0, 'max'=>1},
  'meta' => {'type'=>'Meta', 'path'=>'Sequence.meta', 'min'=>0, 'max'=>1},
  'implicitRules' => {'type'=>'uri', 'path'=>'Sequence.implicitRules', 'min'=>0, 'max'=>1},
  'language' => {'type'=>'code', 'path'=>'Sequence.language', 'min'=>0, 'max'=>1, 'binding'=>{'strength'=>'extensible', 'uri'=>'http://hl7.org/fhir/ValueSet/languages'}},
  'text' => {'type'=>'Narrative', 'path'=>'Sequence.text', 'min'=>0, 'max'=>1},
  'contained' => {'type'=>'Resource', 'path'=>'Sequence.contained', 'min'=>0, 'max'=>Float::INFINITY},
  'extension' => {'type'=>'Extension', 'path'=>'Sequence.extension', 'min'=>0, 'max'=>Float::INFINITY},
  'modifierExtension' => {'type'=>'Extension', 'path'=>'Sequence.modifierExtension', 'min'=>0, 'max'=>Float::INFINITY},
  'identifier' => {'type'=>'Identifier', 'path'=>'Sequence.identifier', 'min'=>0, 'max'=>Float::INFINITY},
  'type' => {'valid_codes'=>{'http://hl7.org/fhir/sequence-type'=>['AA', 'DNA', 'RNA', 'AA', 'DNA', 'RNA']}, 'type'=>'code', 'path'=>'Sequence.type', 'min'=>1, 'max'=>1, 'binding'=>{'strength'=>'example', 'uri'=>'http://hl7.org/fhir/ValueSet/sequence-type'}},
  'coordinateSystem' => {'type'=>'integer', 'path'=>'Sequence.coordinateSystem', 'min'=>1, 'max'=>1},
  'patient' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Patient'], 'type'=>'Reference', 'path'=>'Sequence.patient', 'min'=>0, 'max'=>1},
  'specimen' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Specimen'], 'type'=>'Reference', 'path'=>'Sequence.specimen', 'min'=>0, 'max'=>1},
  'device' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Device'], 'type'=>'Reference', 'path'=>'Sequence.device', 'min'=>0, 'max'=>1},
  'quantity' => {'type'=>'Quantity', 'path'=>'Sequence.quantity', 'min'=>0, 'max'=>1},
  'referenceSeq' => {'type'=>'Sequence::ReferenceSeq', 'path'=>'Sequence.referenceSeq', 'min'=>0, 'max'=>1},
  'variant' => {'type'=>'Sequence::Variant', 'path'=>'Sequence.variant', 'min'=>0, 'max'=>Float::INFINITY},
  'observedSeq' => {'type'=>'string', 'path'=>'Sequence.observedSeq', 'min'=>0, 'max'=>1},
  'quality' => {'type'=>'Sequence::Quality', 'path'=>'Sequence.quality', 'min'=>0, 'max'=>Float::INFINITY},
  'readCoverage' => {'type'=>'integer', 'path'=>'Sequence.readCoverage', 'min'=>0, 'max'=>1},
  'repository' => {'type'=>'Sequence::Repository', 'path'=>'Sequence.repository', 'min'=>0, 'max'=>Float::INFINITY},
  'pointer' => {'type_profiles'=>['http://hl7.org/fhir/StructureDefinition/Sequence'], 'type'=>'Reference', 'path'=>'Sequence.pointer', 'min'=>0, 'max'=>Float::INFINITY},
  'structureVariant' => {'type'=>'Sequence::StructureVariant', 'path'=>'Sequence.structureVariant', 'min'=>0, 'max'=>Float::INFINITY}
}

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Xml

from_xml, is_valid?, #to_xml, validate

Methods included from Json

from_json, #to_json

Methods included from Hashable

#from_hash, #to_hash

Methods inherited from Model

#attribute_mismatch, #compare_attribute, #equals?, #initialize, #is_valid?, #method_missing, #mismatch, #to_reference, #validate, #validate_profile

Constructor Details

This class inherits a constructor from FHIR::Model

Dynamic Method Handling

This class handles dynamic methods through the method_missing method in the class FHIR::Model

Instance Attribute Details

#contained ⇒ Object

0-* [ Resource ]



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# File 'lib/fhir/resources/Sequence.rb', line 231

def contained
  @contained
end

#coordinateSystem ⇒ Object

1-1 integer



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# File 'lib/fhir/resources/Sequence.rb', line 236

def coordinateSystem
  @coordinateSystem
end

#device ⇒ Object

0-1 Reference(Device)



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# File 'lib/fhir/resources/Sequence.rb', line 239

def device
  @device
end

#extension ⇒ Object

0-* [ Extension ]



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# File 'lib/fhir/resources/Sequence.rb', line 232

def extension
  @extension
end

#id ⇒ Object

0-1 id



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# File 'lib/fhir/resources/Sequence.rb', line 226

def id
  @id
end

#identifier ⇒ Object

0-* [ Identifier ]



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# File 'lib/fhir/resources/Sequence.rb', line 234

def identifier
  @identifier
end

#implicitRules ⇒ Object

0-1 uri



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# File 'lib/fhir/resources/Sequence.rb', line 228

def implicitRules
  @implicitRules
end

#language ⇒ Object

0-1 code



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# File 'lib/fhir/resources/Sequence.rb', line 229

def language
  @language
end

#meta ⇒ Object

0-1 Meta



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# File 'lib/fhir/resources/Sequence.rb', line 227

def meta
  @meta
end

#modifierExtension ⇒ Object

0-* [ Extension ]



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# File 'lib/fhir/resources/Sequence.rb', line 233

def modifierExtension
  @modifierExtension
end

#observedSeq ⇒ Object

0-1 string



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# File 'lib/fhir/resources/Sequence.rb', line 243

def observedSeq
  @observedSeq
end

#patient ⇒ Object

0-1 Reference(Patient)



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# File 'lib/fhir/resources/Sequence.rb', line 237

def patient
  @patient
end

#pointer ⇒ Object

0-* [ Reference(Sequence) ]



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# File 'lib/fhir/resources/Sequence.rb', line 247

def pointer
  @pointer
end

#quality ⇒ Object

0-* [ Sequence::Quality ]



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# File 'lib/fhir/resources/Sequence.rb', line 244

def quality
  @quality
end

#quantity ⇒ Object

0-1 Quantity



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# File 'lib/fhir/resources/Sequence.rb', line 240

def quantity
  @quantity
end

#readCoverage ⇒ Object

0-1 integer



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# File 'lib/fhir/resources/Sequence.rb', line 245

def readCoverage
  @readCoverage
end

#referenceSeq ⇒ Object

0-1 Sequence::ReferenceSeq



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# File 'lib/fhir/resources/Sequence.rb', line 241

def referenceSeq
  @referenceSeq
end

#repository ⇒ Object

0-* [ Sequence::Repository ]



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# File 'lib/fhir/resources/Sequence.rb', line 246

def repository
  @repository
end

#specimen ⇒ Object

0-1 Reference(Specimen)



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# File 'lib/fhir/resources/Sequence.rb', line 238

def specimen
  @specimen
end

#structureVariant ⇒ Object

0-* [ Sequence::StructureVariant ]



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# File 'lib/fhir/resources/Sequence.rb', line 248

def structureVariant
  @structureVariant
end

#text ⇒ Object

0-1 Narrative



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# File 'lib/fhir/resources/Sequence.rb', line 230

def text
  @text
end

#type ⇒ Object

1-1 code



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# File 'lib/fhir/resources/Sequence.rb', line 235

def type
  @type
end

#variant ⇒ Object

0-* [ Sequence::Variant ]



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# File 'lib/fhir/resources/Sequence.rb', line 242

def variant
  @variant
end

Instance Method Details

#resourceType ⇒ Object 



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# File 'lib/fhir/resources/Sequence.rb', line 250

def resourceType
  'Sequence'
end