Class: EcfClassify::CLI

Inherits:
Thor
  • Object
show all
Defined in:
lib/ecf_classify.rb

Instance Method Summary collapse

Instance Method Details

#__print_version ⇒ Object 



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# File 'lib/ecf_classify.rb', line 14

def __print_version
  puts "#{EcfClassify::NAME}: #{EcfClassify::VERSION}"
  exit
end

#groups(file) ⇒ Object 



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# File 'lib/ecf_classify.rb', line 21

def groups(file)
  handle_help_option(__method__)

  conserved = Tempfile.new("conserved")
  begin
    STDERR.puts EcfClassify::Runner.general(file,conserved.path)
    conserved.rewind
    STDOUT.puts EcfClassify::Runner.specific(conserved.path, __method__, options.probabilities)
  ensure
    conserved.close
    conserved.unlink
  end
end

#subgroups(file) ⇒ Object 



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# File 'lib/ecf_classify.rb', line 37

def subgroups(file)
  handle_help_option(__method__)

  conserved = Tempfile.new("conserved")
  begin
    STDERR.puts EcfClassify::Runner.general(file,conserved.path)
    conserved.rewind
    STDOUT.puts EcfClassify::Runner.specific(conserved.path, __method__, options.probabilities)
  ensure
    conserved.close
    conserved.unlink
  end
end