Class: Diggit::Dig

Inherits:
Object
  • Object
show all
Defined in:
lib/dgit/core.rb

Overview

Main diggit class. It must be runned in a folder containing a ‘.dgit folder with a proper configuration. Access configuration, options, sources and journal from this object. It implements the singleton pattern. You can initialize it via Dig.init and retrieve the instance via Dig.it.

Constant Summary collapse

DGIT_FOLDER = 
".dgit".freeze

Instance Attribute Summary collapse

Class Method Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(folder) ⇒ Dig

Constructor. Should not be called directly. Use init and it instead.



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# File 'lib/dgit/core.rb', line 373

def initialize(folder)
  raise "Folder #{folder} is not a diggit folder." unless File.exist?(File.expand_path(DGIT_FOLDER, folder))
  @plugin_loader = PluginLoader.instance
  @folder = folder
end

Instance Attribute Details

#config ⇒ Config (readonly)

Returns the config.

Returns:



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# File 'lib/dgit/core.rb', line 302

class Dig
  DGIT_FOLDER = ".dgit".freeze
  DGIT_SOURCES = "sources".freeze
  DGIT_CONFIG = "config".freeze
  DGIT_OPTIONS = "options".freeze
  DGIT_JOURNAL = "journal".freeze

  private_constant :DGIT_SOURCES, :DGIT_CONFIG, :DGIT_OPTIONS, :DGIT_JOURNAL

  attr_reader :config, :options, :journal, :plugin_loader, :folder

  @diggit = nil

  # Returns the diggit instance.
  # @return [Dig] the instance.
  def self.it
    raise "Diggit has not been initialized." if @diggit.nil?
    @diggit
  end

  # Initialize and return the diggit instance into the given folder.
  # @param folder [String] the path to the folder.
  # @return [Dig] the instance.
  def self.init(folder = '.')
    @diggit = Dig.new(folder)
    @diggit.load_options
    @diggit.load_config
    @diggit.load_journal
    @diggit
  end

  # Initialize a folder to be a diggit folder by creating an empty configuration.
  # It creates a `.dgit` folder containing a `journal`, `config`, `options` files.
  # It also creates an empty `sources` folder and an empty `plugins` folder.
  # Directory creation is skipped if the `.dgit` folder already exists.
  # @param folder [String] the path to the folder.
  # @return [void]
  def self.init_dir(folder = '.')
    dgit_folder = File.expand_path(DGIT_FOLDER, folder)
    unless File.exist?(dgit_folder)
      FileUtils.mkdir(dgit_folder)
      Oj.to_file(File.expand_path(DGIT_CONFIG, dgit_folder), Config.empty_config)
      Oj.to_file(File.expand_path(DGIT_OPTIONS, dgit_folder), {})
      FileUtils.touch(File.expand_path(DGIT_SOURCES, dgit_folder))
      Oj.to_file(File.expand_path(DGIT_JOURNAL, dgit_folder), Journal.new)
    end
    FileUtils.mkdir(File.expand_path('sources', folder)) unless File.exist?(File.expand_path('sources', folder))
    return if File.exist?(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/analysis", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/addon", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/join", folder))
  end

  # Return the path of the given config file
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def config_path(name)
    File.expand_path(name, File.expand_path(DGIT_FOLDER, @folder))
  end

  # Return the path of the given file in the diggit folder
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def file_path(name)
    File.expand_path(name, @folder)
  end

  # Constructor. Should not be called directly.
  # Use {.init} and {.it} instead.
  # @return [Dig] a diggit object.
  def initialize(folder)
    raise "Folder #{folder} is not a diggit folder." unless File.exist?(File.expand_path(DGIT_FOLDER, folder))
    @plugin_loader = PluginLoader.instance
    @folder = folder
  end

  # Load the journal from `.dgit/journal`
  # @return [void]
  def load_journal
    url_array = []
    IO.readlines(config_path(DGIT_SOURCES)).each { |l| url_array << l.strip }
    @journal = Oj.load_file(config_path(DGIT_JOURNAL))
    url_array.each do |url|
      @journal.add_source(url)
    end
  end

  # Save the journal to `.dgit/journal`
  # @return [void]
  def save_journal
    File.open(config_path(DGIT_SOURCES), "w") { |f| @journal.sources.each { |source| f.puts(source.url) } }
    Oj.to_file(config_path(DGIT_JOURNAL), @journal, indent: 2)
  end

  # Load the options from `.dgit/options`
  # @return [void]
  def load_options
    @options = Oj.load_file(config_path(DGIT_OPTIONS))
  end

  # Save the options to `.dgit/options`
  # @return [void]
  def save_options
    Oj.to_file(config_path(DGIT_OPTIONS), options)
  end

  # Load the config from `.dgit/config`
  # @return [void]
  def load_config
    @config = Config.new(Oj.load_file(config_path(DGIT_CONFIG)))
  end

  # Save the config to `.dgit/config`
  # @return [void]
  def save_config
    config_hash = @config.to_hash
    Oj.to_file(config_path(DGIT_CONFIG), config_hash)
  end

  # Clone the repository of all sources with the given source ids.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @return [void]
  def clone(*source_ids)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.new? }.each(&:clone)
  ensure
    save_journal
  end

  # Perform the given analyses on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param analyses [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def analyze(source_ids = [], analyses = [], mode = :run)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.cloned? }.each do |s|
      @config.get_analyses(*analyses).each do |klass|
        a = klass.new(@options)
        s.load_repository
        a.source = s
        clean(a, s.entry) if clean_mode?(mode) && s.entry.has?(a)
        run(a, s.entry) if run_mode?(mode) && !s.entry.has?(a)
      end
    end
  end

  # Perform the given joins on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param joins [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def join(source_ids = [], joins = [], mode = :run)
    @config.get_joins(*joins).each do |klass|
      j = klass.new(@options)
      clean(j, @journal.workspace) if clean_mode?(mode) && @journal.workspace.has?(j)
      source_array = @journal.sources_by_ids(*source_ids).select do |s|
        s.entry.cloned? && (klass.required_analyses - s.entry.performed.map(&:name)).empty?
      end
      j.sources = source_array
      run(j, @journal.workspace) if run_mode?(mode) && !source_array.empty? && !@journal.workspace.has?(j)
    end
  end

    private

  def clean_mode?(mode)
    mode == :rerun || mode == :clean
  end

  def run_mode?(mode)
    mode == :rerun || mode == :run
  end

  def clean(runnable, placeholder)
    placeholder.clean(runnable)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.clean
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error cleaning #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    ensure
      save_journal
    end
  end

  def run(runnable, placeholder)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.run
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error running #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    else
      entry.toc
      placeholder.performed << entry
    ensure
      save_journal
    end
  end
end

#folder ⇒ String (readonly)

Returns the folder in which diggit is running.

Returns:

  • (String) —

    the folder in which diggit is running.



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# File 'lib/dgit/core.rb', line 302

class Dig
  DGIT_FOLDER = ".dgit".freeze
  DGIT_SOURCES = "sources".freeze
  DGIT_CONFIG = "config".freeze
  DGIT_OPTIONS = "options".freeze
  DGIT_JOURNAL = "journal".freeze

  private_constant :DGIT_SOURCES, :DGIT_CONFIG, :DGIT_OPTIONS, :DGIT_JOURNAL

  attr_reader :config, :options, :journal, :plugin_loader, :folder

  @diggit = nil

  # Returns the diggit instance.
  # @return [Dig] the instance.
  def self.it
    raise "Diggit has not been initialized." if @diggit.nil?
    @diggit
  end

  # Initialize and return the diggit instance into the given folder.
  # @param folder [String] the path to the folder.
  # @return [Dig] the instance.
  def self.init(folder = '.')
    @diggit = Dig.new(folder)
    @diggit.load_options
    @diggit.load_config
    @diggit.load_journal
    @diggit
  end

  # Initialize a folder to be a diggit folder by creating an empty configuration.
  # It creates a `.dgit` folder containing a `journal`, `config`, `options` files.
  # It also creates an empty `sources` folder and an empty `plugins` folder.
  # Directory creation is skipped if the `.dgit` folder already exists.
  # @param folder [String] the path to the folder.
  # @return [void]
  def self.init_dir(folder = '.')
    dgit_folder = File.expand_path(DGIT_FOLDER, folder)
    unless File.exist?(dgit_folder)
      FileUtils.mkdir(dgit_folder)
      Oj.to_file(File.expand_path(DGIT_CONFIG, dgit_folder), Config.empty_config)
      Oj.to_file(File.expand_path(DGIT_OPTIONS, dgit_folder), {})
      FileUtils.touch(File.expand_path(DGIT_SOURCES, dgit_folder))
      Oj.to_file(File.expand_path(DGIT_JOURNAL, dgit_folder), Journal.new)
    end
    FileUtils.mkdir(File.expand_path('sources', folder)) unless File.exist?(File.expand_path('sources', folder))
    return if File.exist?(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/analysis", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/addon", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/join", folder))
  end

  # Return the path of the given config file
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def config_path(name)
    File.expand_path(name, File.expand_path(DGIT_FOLDER, @folder))
  end

  # Return the path of the given file in the diggit folder
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def file_path(name)
    File.expand_path(name, @folder)
  end

  # Constructor. Should not be called directly.
  # Use {.init} and {.it} instead.
  # @return [Dig] a diggit object.
  def initialize(folder)
    raise "Folder #{folder} is not a diggit folder." unless File.exist?(File.expand_path(DGIT_FOLDER, folder))
    @plugin_loader = PluginLoader.instance
    @folder = folder
  end

  # Load the journal from `.dgit/journal`
  # @return [void]
  def load_journal
    url_array = []
    IO.readlines(config_path(DGIT_SOURCES)).each { |l| url_array << l.strip }
    @journal = Oj.load_file(config_path(DGIT_JOURNAL))
    url_array.each do |url|
      @journal.add_source(url)
    end
  end

  # Save the journal to `.dgit/journal`
  # @return [void]
  def save_journal
    File.open(config_path(DGIT_SOURCES), "w") { |f| @journal.sources.each { |source| f.puts(source.url) } }
    Oj.to_file(config_path(DGIT_JOURNAL), @journal, indent: 2)
  end

  # Load the options from `.dgit/options`
  # @return [void]
  def load_options
    @options = Oj.load_file(config_path(DGIT_OPTIONS))
  end

  # Save the options to `.dgit/options`
  # @return [void]
  def save_options
    Oj.to_file(config_path(DGIT_OPTIONS), options)
  end

  # Load the config from `.dgit/config`
  # @return [void]
  def load_config
    @config = Config.new(Oj.load_file(config_path(DGIT_CONFIG)))
  end

  # Save the config to `.dgit/config`
  # @return [void]
  def save_config
    config_hash = @config.to_hash
    Oj.to_file(config_path(DGIT_CONFIG), config_hash)
  end

  # Clone the repository of all sources with the given source ids.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @return [void]
  def clone(*source_ids)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.new? }.each(&:clone)
  ensure
    save_journal
  end

  # Perform the given analyses on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param analyses [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def analyze(source_ids = [], analyses = [], mode = :run)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.cloned? }.each do |s|
      @config.get_analyses(*analyses).each do |klass|
        a = klass.new(@options)
        s.load_repository
        a.source = s
        clean(a, s.entry) if clean_mode?(mode) && s.entry.has?(a)
        run(a, s.entry) if run_mode?(mode) && !s.entry.has?(a)
      end
    end
  end

  # Perform the given joins on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param joins [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def join(source_ids = [], joins = [], mode = :run)
    @config.get_joins(*joins).each do |klass|
      j = klass.new(@options)
      clean(j, @journal.workspace) if clean_mode?(mode) && @journal.workspace.has?(j)
      source_array = @journal.sources_by_ids(*source_ids).select do |s|
        s.entry.cloned? && (klass.required_analyses - s.entry.performed.map(&:name)).empty?
      end
      j.sources = source_array
      run(j, @journal.workspace) if run_mode?(mode) && !source_array.empty? && !@journal.workspace.has?(j)
    end
  end

    private

  def clean_mode?(mode)
    mode == :rerun || mode == :clean
  end

  def run_mode?(mode)
    mode == :rerun || mode == :run
  end

  def clean(runnable, placeholder)
    placeholder.clean(runnable)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.clean
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error cleaning #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    ensure
      save_journal
    end
  end

  def run(runnable, placeholder)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.run
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error running #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    else
      entry.toc
      placeholder.performed << entry
    ensure
      save_journal
    end
  end
end

#journal ⇒ Journal (readonly)

Returns the journal.

Returns:



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# File 'lib/dgit/core.rb', line 302

class Dig
  DGIT_FOLDER = ".dgit".freeze
  DGIT_SOURCES = "sources".freeze
  DGIT_CONFIG = "config".freeze
  DGIT_OPTIONS = "options".freeze
  DGIT_JOURNAL = "journal".freeze

  private_constant :DGIT_SOURCES, :DGIT_CONFIG, :DGIT_OPTIONS, :DGIT_JOURNAL

  attr_reader :config, :options, :journal, :plugin_loader, :folder

  @diggit = nil

  # Returns the diggit instance.
  # @return [Dig] the instance.
  def self.it
    raise "Diggit has not been initialized." if @diggit.nil?
    @diggit
  end

  # Initialize and return the diggit instance into the given folder.
  # @param folder [String] the path to the folder.
  # @return [Dig] the instance.
  def self.init(folder = '.')
    @diggit = Dig.new(folder)
    @diggit.load_options
    @diggit.load_config
    @diggit.load_journal
    @diggit
  end

  # Initialize a folder to be a diggit folder by creating an empty configuration.
  # It creates a `.dgit` folder containing a `journal`, `config`, `options` files.
  # It also creates an empty `sources` folder and an empty `plugins` folder.
  # Directory creation is skipped if the `.dgit` folder already exists.
  # @param folder [String] the path to the folder.
  # @return [void]
  def self.init_dir(folder = '.')
    dgit_folder = File.expand_path(DGIT_FOLDER, folder)
    unless File.exist?(dgit_folder)
      FileUtils.mkdir(dgit_folder)
      Oj.to_file(File.expand_path(DGIT_CONFIG, dgit_folder), Config.empty_config)
      Oj.to_file(File.expand_path(DGIT_OPTIONS, dgit_folder), {})
      FileUtils.touch(File.expand_path(DGIT_SOURCES, dgit_folder))
      Oj.to_file(File.expand_path(DGIT_JOURNAL, dgit_folder), Journal.new)
    end
    FileUtils.mkdir(File.expand_path('sources', folder)) unless File.exist?(File.expand_path('sources', folder))
    return if File.exist?(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/analysis", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/addon", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/join", folder))
  end

  # Return the path of the given config file
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def config_path(name)
    File.expand_path(name, File.expand_path(DGIT_FOLDER, @folder))
  end

  # Return the path of the given file in the diggit folder
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def file_path(name)
    File.expand_path(name, @folder)
  end

  # Constructor. Should not be called directly.
  # Use {.init} and {.it} instead.
  # @return [Dig] a diggit object.
  def initialize(folder)
    raise "Folder #{folder} is not a diggit folder." unless File.exist?(File.expand_path(DGIT_FOLDER, folder))
    @plugin_loader = PluginLoader.instance
    @folder = folder
  end

  # Load the journal from `.dgit/journal`
  # @return [void]
  def load_journal
    url_array = []
    IO.readlines(config_path(DGIT_SOURCES)).each { |l| url_array << l.strip }
    @journal = Oj.load_file(config_path(DGIT_JOURNAL))
    url_array.each do |url|
      @journal.add_source(url)
    end
  end

  # Save the journal to `.dgit/journal`
  # @return [void]
  def save_journal
    File.open(config_path(DGIT_SOURCES), "w") { |f| @journal.sources.each { |source| f.puts(source.url) } }
    Oj.to_file(config_path(DGIT_JOURNAL), @journal, indent: 2)
  end

  # Load the options from `.dgit/options`
  # @return [void]
  def load_options
    @options = Oj.load_file(config_path(DGIT_OPTIONS))
  end

  # Save the options to `.dgit/options`
  # @return [void]
  def save_options
    Oj.to_file(config_path(DGIT_OPTIONS), options)
  end

  # Load the config from `.dgit/config`
  # @return [void]
  def load_config
    @config = Config.new(Oj.load_file(config_path(DGIT_CONFIG)))
  end

  # Save the config to `.dgit/config`
  # @return [void]
  def save_config
    config_hash = @config.to_hash
    Oj.to_file(config_path(DGIT_CONFIG), config_hash)
  end

  # Clone the repository of all sources with the given source ids.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @return [void]
  def clone(*source_ids)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.new? }.each(&:clone)
  ensure
    save_journal
  end

  # Perform the given analyses on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param analyses [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def analyze(source_ids = [], analyses = [], mode = :run)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.cloned? }.each do |s|
      @config.get_analyses(*analyses).each do |klass|
        a = klass.new(@options)
        s.load_repository
        a.source = s
        clean(a, s.entry) if clean_mode?(mode) && s.entry.has?(a)
        run(a, s.entry) if run_mode?(mode) && !s.entry.has?(a)
      end
    end
  end

  # Perform the given joins on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param joins [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def join(source_ids = [], joins = [], mode = :run)
    @config.get_joins(*joins).each do |klass|
      j = klass.new(@options)
      clean(j, @journal.workspace) if clean_mode?(mode) && @journal.workspace.has?(j)
      source_array = @journal.sources_by_ids(*source_ids).select do |s|
        s.entry.cloned? && (klass.required_analyses - s.entry.performed.map(&:name)).empty?
      end
      j.sources = source_array
      run(j, @journal.workspace) if run_mode?(mode) && !source_array.empty? && !@journal.workspace.has?(j)
    end
  end

    private

  def clean_mode?(mode)
    mode == :rerun || mode == :clean
  end

  def run_mode?(mode)
    mode == :rerun || mode == :run
  end

  def clean(runnable, placeholder)
    placeholder.clean(runnable)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.clean
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error cleaning #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    ensure
      save_journal
    end
  end

  def run(runnable, placeholder)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.run
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error running #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    else
      entry.toc
      placeholder.performed << entry
    ensure
      save_journal
    end
  end
end

#options ⇒ Hash<String,Object> (readonly)

Returns the options.

Returns:

  • (Hash<String,Object>) —

    the options.



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# File 'lib/dgit/core.rb', line 302

class Dig
  DGIT_FOLDER = ".dgit".freeze
  DGIT_SOURCES = "sources".freeze
  DGIT_CONFIG = "config".freeze
  DGIT_OPTIONS = "options".freeze
  DGIT_JOURNAL = "journal".freeze

  private_constant :DGIT_SOURCES, :DGIT_CONFIG, :DGIT_OPTIONS, :DGIT_JOURNAL

  attr_reader :config, :options, :journal, :plugin_loader, :folder

  @diggit = nil

  # Returns the diggit instance.
  # @return [Dig] the instance.
  def self.it
    raise "Diggit has not been initialized." if @diggit.nil?
    @diggit
  end

  # Initialize and return the diggit instance into the given folder.
  # @param folder [String] the path to the folder.
  # @return [Dig] the instance.
  def self.init(folder = '.')
    @diggit = Dig.new(folder)
    @diggit.load_options
    @diggit.load_config
    @diggit.load_journal
    @diggit
  end

  # Initialize a folder to be a diggit folder by creating an empty configuration.
  # It creates a `.dgit` folder containing a `journal`, `config`, `options` files.
  # It also creates an empty `sources` folder and an empty `plugins` folder.
  # Directory creation is skipped if the `.dgit` folder already exists.
  # @param folder [String] the path to the folder.
  # @return [void]
  def self.init_dir(folder = '.')
    dgit_folder = File.expand_path(DGIT_FOLDER, folder)
    unless File.exist?(dgit_folder)
      FileUtils.mkdir(dgit_folder)
      Oj.to_file(File.expand_path(DGIT_CONFIG, dgit_folder), Config.empty_config)
      Oj.to_file(File.expand_path(DGIT_OPTIONS, dgit_folder), {})
      FileUtils.touch(File.expand_path(DGIT_SOURCES, dgit_folder))
      Oj.to_file(File.expand_path(DGIT_JOURNAL, dgit_folder), Journal.new)
    end
    FileUtils.mkdir(File.expand_path('sources', folder)) unless File.exist?(File.expand_path('sources', folder))
    return if File.exist?(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/analysis", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/addon", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/join", folder))
  end

  # Return the path of the given config file
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def config_path(name)
    File.expand_path(name, File.expand_path(DGIT_FOLDER, @folder))
  end

  # Return the path of the given file in the diggit folder
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def file_path(name)
    File.expand_path(name, @folder)
  end

  # Constructor. Should not be called directly.
  # Use {.init} and {.it} instead.
  # @return [Dig] a diggit object.
  def initialize(folder)
    raise "Folder #{folder} is not a diggit folder." unless File.exist?(File.expand_path(DGIT_FOLDER, folder))
    @plugin_loader = PluginLoader.instance
    @folder = folder
  end

  # Load the journal from `.dgit/journal`
  # @return [void]
  def load_journal
    url_array = []
    IO.readlines(config_path(DGIT_SOURCES)).each { |l| url_array << l.strip }
    @journal = Oj.load_file(config_path(DGIT_JOURNAL))
    url_array.each do |url|
      @journal.add_source(url)
    end
  end

  # Save the journal to `.dgit/journal`
  # @return [void]
  def save_journal
    File.open(config_path(DGIT_SOURCES), "w") { |f| @journal.sources.each { |source| f.puts(source.url) } }
    Oj.to_file(config_path(DGIT_JOURNAL), @journal, indent: 2)
  end

  # Load the options from `.dgit/options`
  # @return [void]
  def load_options
    @options = Oj.load_file(config_path(DGIT_OPTIONS))
  end

  # Save the options to `.dgit/options`
  # @return [void]
  def save_options
    Oj.to_file(config_path(DGIT_OPTIONS), options)
  end

  # Load the config from `.dgit/config`
  # @return [void]
  def load_config
    @config = Config.new(Oj.load_file(config_path(DGIT_CONFIG)))
  end

  # Save the config to `.dgit/config`
  # @return [void]
  def save_config
    config_hash = @config.to_hash
    Oj.to_file(config_path(DGIT_CONFIG), config_hash)
  end

  # Clone the repository of all sources with the given source ids.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @return [void]
  def clone(*source_ids)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.new? }.each(&:clone)
  ensure
    save_journal
  end

  # Perform the given analyses on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param analyses [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def analyze(source_ids = [], analyses = [], mode = :run)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.cloned? }.each do |s|
      @config.get_analyses(*analyses).each do |klass|
        a = klass.new(@options)
        s.load_repository
        a.source = s
        clean(a, s.entry) if clean_mode?(mode) && s.entry.has?(a)
        run(a, s.entry) if run_mode?(mode) && !s.entry.has?(a)
      end
    end
  end

  # Perform the given joins on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param joins [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def join(source_ids = [], joins = [], mode = :run)
    @config.get_joins(*joins).each do |klass|
      j = klass.new(@options)
      clean(j, @journal.workspace) if clean_mode?(mode) && @journal.workspace.has?(j)
      source_array = @journal.sources_by_ids(*source_ids).select do |s|
        s.entry.cloned? && (klass.required_analyses - s.entry.performed.map(&:name)).empty?
      end
      j.sources = source_array
      run(j, @journal.workspace) if run_mode?(mode) && !source_array.empty? && !@journal.workspace.has?(j)
    end
  end

    private

  def clean_mode?(mode)
    mode == :rerun || mode == :clean
  end

  def run_mode?(mode)
    mode == :rerun || mode == :run
  end

  def clean(runnable, placeholder)
    placeholder.clean(runnable)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.clean
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error cleaning #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    ensure
      save_journal
    end
  end

  def run(runnable, placeholder)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.run
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error running #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    else
      entry.toc
      placeholder.performed << entry
    ensure
      save_journal
    end
  end
end

#plugin_loader ⇒ PluginLoader (readonly)

Returns utility classes to load plugins.

Returns:



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# File 'lib/dgit/core.rb', line 302

class Dig
  DGIT_FOLDER = ".dgit".freeze
  DGIT_SOURCES = "sources".freeze
  DGIT_CONFIG = "config".freeze
  DGIT_OPTIONS = "options".freeze
  DGIT_JOURNAL = "journal".freeze

  private_constant :DGIT_SOURCES, :DGIT_CONFIG, :DGIT_OPTIONS, :DGIT_JOURNAL

  attr_reader :config, :options, :journal, :plugin_loader, :folder

  @diggit = nil

  # Returns the diggit instance.
  # @return [Dig] the instance.
  def self.it
    raise "Diggit has not been initialized." if @diggit.nil?
    @diggit
  end

  # Initialize and return the diggit instance into the given folder.
  # @param folder [String] the path to the folder.
  # @return [Dig] the instance.
  def self.init(folder = '.')
    @diggit = Dig.new(folder)
    @diggit.load_options
    @diggit.load_config
    @diggit.load_journal
    @diggit
  end

  # Initialize a folder to be a diggit folder by creating an empty configuration.
  # It creates a `.dgit` folder containing a `journal`, `config`, `options` files.
  # It also creates an empty `sources` folder and an empty `plugins` folder.
  # Directory creation is skipped if the `.dgit` folder already exists.
  # @param folder [String] the path to the folder.
  # @return [void]
  def self.init_dir(folder = '.')
    dgit_folder = File.expand_path(DGIT_FOLDER, folder)
    unless File.exist?(dgit_folder)
      FileUtils.mkdir(dgit_folder)
      Oj.to_file(File.expand_path(DGIT_CONFIG, dgit_folder), Config.empty_config)
      Oj.to_file(File.expand_path(DGIT_OPTIONS, dgit_folder), {})
      FileUtils.touch(File.expand_path(DGIT_SOURCES, dgit_folder))
      Oj.to_file(File.expand_path(DGIT_JOURNAL, dgit_folder), Journal.new)
    end
    FileUtils.mkdir(File.expand_path('sources', folder)) unless File.exist?(File.expand_path('sources', folder))
    return if File.exist?(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/analysis", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/addon", folder))
    FileUtils.mkdir_p(File.expand_path("plugins/join", folder))
  end

  # Return the path of the given config file
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def config_path(name)
    File.expand_path(name, File.expand_path(DGIT_FOLDER, @folder))
  end

  # Return the path of the given file in the diggit folder
  # @param name [String] name of the file
  # @return [String] the path to the file.
  def file_path(name)
    File.expand_path(name, @folder)
  end

  # Constructor. Should not be called directly.
  # Use {.init} and {.it} instead.
  # @return [Dig] a diggit object.
  def initialize(folder)
    raise "Folder #{folder} is not a diggit folder." unless File.exist?(File.expand_path(DGIT_FOLDER, folder))
    @plugin_loader = PluginLoader.instance
    @folder = folder
  end

  # Load the journal from `.dgit/journal`
  # @return [void]
  def load_journal
    url_array = []
    IO.readlines(config_path(DGIT_SOURCES)).each { |l| url_array << l.strip }
    @journal = Oj.load_file(config_path(DGIT_JOURNAL))
    url_array.each do |url|
      @journal.add_source(url)
    end
  end

  # Save the journal to `.dgit/journal`
  # @return [void]
  def save_journal
    File.open(config_path(DGIT_SOURCES), "w") { |f| @journal.sources.each { |source| f.puts(source.url) } }
    Oj.to_file(config_path(DGIT_JOURNAL), @journal, indent: 2)
  end

  # Load the options from `.dgit/options`
  # @return [void]
  def load_options
    @options = Oj.load_file(config_path(DGIT_OPTIONS))
  end

  # Save the options to `.dgit/options`
  # @return [void]
  def save_options
    Oj.to_file(config_path(DGIT_OPTIONS), options)
  end

  # Load the config from `.dgit/config`
  # @return [void]
  def load_config
    @config = Config.new(Oj.load_file(config_path(DGIT_CONFIG)))
  end

  # Save the config to `.dgit/config`
  # @return [void]
  def save_config
    config_hash = @config.to_hash
    Oj.to_file(config_path(DGIT_CONFIG), config_hash)
  end

  # Clone the repository of all sources with the given source ids.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @return [void]
  def clone(*source_ids)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.new? }.each(&:clone)
  ensure
    save_journal
  end

  # Perform the given analyses on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param analyses [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def analyze(source_ids = [], analyses = [], mode = :run)
    @journal.sources_by_ids(*source_ids).select { |s| s.entry.cloned? }.each do |s|
      @config.get_analyses(*analyses).each do |klass|
        a = klass.new(@options)
        s.load_repository
        a.source = s
        clean(a, s.entry) if clean_mode?(mode) && s.entry.has?(a)
        run(a, s.entry) if run_mode?(mode) && !s.entry.has?(a)
      end
    end
  end

  # Perform the given joins on sources with the given ids using the given mode.
  # @param source_ids [Array<Integer>] the ids of the sources.
  # @param joins [Array<String>] the names of the analyses.
  # @param mode [Symbol] the mode: `:run`, `:rerun` or `:clean`.
  # @return [void]
  def join(source_ids = [], joins = [], mode = :run)
    @config.get_joins(*joins).each do |klass|
      j = klass.new(@options)
      clean(j, @journal.workspace) if clean_mode?(mode) && @journal.workspace.has?(j)
      source_array = @journal.sources_by_ids(*source_ids).select do |s|
        s.entry.cloned? && (klass.required_analyses - s.entry.performed.map(&:name)).empty?
      end
      j.sources = source_array
      run(j, @journal.workspace) if run_mode?(mode) && !source_array.empty? && !@journal.workspace.has?(j)
    end
  end

    private

  def clean_mode?(mode)
    mode == :rerun || mode == :clean
  end

  def run_mode?(mode)
    mode == :rerun || mode == :run
  end

  def clean(runnable, placeholder)
    placeholder.clean(runnable)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.clean
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error cleaning #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    ensure
      save_journal
    end
  end

  def run(runnable, placeholder)
    entry = RunnableEntry.new(runnable)
    begin
      runnable.run
    rescue StandardError => e
      entry.toc
      entry.error = e
      placeholder.canceled << entry
      Log.error "Error running #{runnable.name}: #{e}"
      e.backtrace.each { |l| Log.debug(l) }
    else
      entry.toc
      placeholder.performed << entry
    ensure
      save_journal
    end
  end
end

Class Method Details

.init(folder = '.') ⇒ Dig

Initialize and return the diggit instance into the given folder.

Parameters:

  • folder (String) (defaults to: '.') —

    the path to the folder.

Returns:

  • (Dig) —

    the instance.



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# File 'lib/dgit/core.rb', line 325

def self.init(folder = '.')
  @diggit = Dig.new(folder)
  @diggit.load_options
  @diggit.load_config
  @diggit.load_journal
  @diggit
end

.init_dir(folder = '.') ⇒ void

This method returns an undefined value.

Initialize a folder to be a diggit folder by creating an empty configuration. It creates a ‘.dgit` folder containing a `journal`, `config`, `options` files. It also creates an empty `sources` folder and an empty `plugins` folder. Directory creation is skipped if the `.dgit` folder already exists.

Parameters:

  • folder (String) (defaults to: '.') —

    the path to the folder.



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# File 'lib/dgit/core.rb', line 339

def self.init_dir(folder = '.')
  dgit_folder = File.expand_path(DGIT_FOLDER, folder)
  unless File.exist?(dgit_folder)
    FileUtils.mkdir(dgit_folder)
    Oj.to_file(File.expand_path(DGIT_CONFIG, dgit_folder), Config.empty_config)
    Oj.to_file(File.expand_path(DGIT_OPTIONS, dgit_folder), {})
    FileUtils.touch(File.expand_path(DGIT_SOURCES, dgit_folder))
    Oj.to_file(File.expand_path(DGIT_JOURNAL, dgit_folder), Journal.new)
  end
  FileUtils.mkdir(File.expand_path('sources', folder)) unless File.exist?(File.expand_path('sources', folder))
  return if File.exist?(File.expand_path("plugins", folder))
  FileUtils.mkdir_p(File.expand_path("plugins", folder))
  FileUtils.mkdir_p(File.expand_path("plugins/analysis", folder))
  FileUtils.mkdir_p(File.expand_path("plugins/addon", folder))
  FileUtils.mkdir_p(File.expand_path("plugins/join", folder))
end

.it ⇒ Dig

Returns the diggit instance.

Returns:

  • (Dig) —

    the instance.



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# File 'lib/dgit/core.rb', line 317

def self.it
  raise "Diggit has not been initialized." if @diggit.nil?
  @diggit
end

Instance Method Details

#analyze(source_ids = [], analyses = [], mode = :run) ⇒ void

This method returns an undefined value.

Perform the given analyses on sources with the given ids using the given mode.

Parameters:

  • source_ids (Array<Integer>) (defaults to: []) —

    the ids of the sources.

  • analyses (Array<String>) (defaults to: []) —

    the names of the analyses.

  • mode (Symbol) (defaults to: :run) —

    the mode: ‘:run`, `:rerun` or `:clean`.



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# File 'lib/dgit/core.rb', line 436

def analyze(source_ids = [], analyses = [], mode = :run)
  @journal.sources_by_ids(*source_ids).select { |s| s.entry.cloned? }.each do |s|
    @config.get_analyses(*analyses).each do |klass|
      a = klass.new(@options)
      s.load_repository
      a.source = s
      clean(a, s.entry) if clean_mode?(mode) && s.entry.has?(a)
      run(a, s.entry) if run_mode?(mode) && !s.entry.has?(a)
    end
  end
end

#clone(*source_ids) ⇒ void

This method returns an undefined value.

Clone the repository of all sources with the given source ids.

Parameters:

  • source_ids (Array<Integer>) —

    the ids of the sources.



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# File 'lib/dgit/core.rb', line 425

def clone(*source_ids)
  @journal.sources_by_ids(*source_ids).select { |s| s.entry.new? }.each(&:clone)
ensure
  save_journal
end

#config_path(name) ⇒ String

Return the path of the given config file

Parameters:

  • name (String) —

    name of the file

Returns:

  • (String) —

    the path to the file.



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# File 'lib/dgit/core.rb', line 359

def config_path(name)
  File.expand_path(name, File.expand_path(DGIT_FOLDER, @folder))
end

#file_path(name) ⇒ String

Return the path of the given file in the diggit folder

Parameters:

  • name (String) —

    name of the file

Returns:

  • (String) —

    the path to the file.



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# File 'lib/dgit/core.rb', line 366

def file_path(name)
  File.expand_path(name, @folder)
end

#join(source_ids = [], joins = [], mode = :run) ⇒ void

This method returns an undefined value.

Perform the given joins on sources with the given ids using the given mode.

Parameters:

  • source_ids (Array<Integer>) (defaults to: []) —

    the ids of the sources.

  • joins (Array<String>) (defaults to: []) —

    the names of the analyses.

  • mode (Symbol) (defaults to: :run) —

    the mode: ‘:run`, `:rerun` or `:clean`.



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# File 'lib/dgit/core.rb', line 453

def join(source_ids = [], joins = [], mode = :run)
  @config.get_joins(*joins).each do |klass|
    j = klass.new(@options)
    clean(j, @journal.workspace) if clean_mode?(mode) && @journal.workspace.has?(j)
    source_array = @journal.sources_by_ids(*source_ids).select do |s|
      s.entry.cloned? && (klass.required_analyses - s.entry.performed.map(&:name)).empty?
    end
    j.sources = source_array
    run(j, @journal.workspace) if run_mode?(mode) && !source_array.empty? && !@journal.workspace.has?(j)
  end
end

#load_config ⇒ void

This method returns an undefined value.

Load the config from ‘.dgit/config`



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# File 'lib/dgit/core.rb', line 411

def load_config
  @config = Config.new(Oj.load_file(config_path(DGIT_CONFIG)))
end

#load_journal ⇒ void

This method returns an undefined value.

Load the journal from ‘.dgit/journal`



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# File 'lib/dgit/core.rb', line 381

def load_journal
  url_array = []
  IO.readlines(config_path(DGIT_SOURCES)).each { |l| url_array << l.strip }
  @journal = Oj.load_file(config_path(DGIT_JOURNAL))
  url_array.each do |url|
    @journal.add_source(url)
  end
end

#load_options ⇒ void

This method returns an undefined value.

Load the options from ‘.dgit/options`



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# File 'lib/dgit/core.rb', line 399

def load_options
  @options = Oj.load_file(config_path(DGIT_OPTIONS))
end

#save_config ⇒ void

This method returns an undefined value.

Save the config to ‘.dgit/config`



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# File 'lib/dgit/core.rb', line 417

def save_config
  config_hash = @config.to_hash
  Oj.to_file(config_path(DGIT_CONFIG), config_hash)
end

#save_journal ⇒ void

This method returns an undefined value.

Save the journal to ‘.dgit/journal`



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# File 'lib/dgit/core.rb', line 392

def save_journal
  File.open(config_path(DGIT_SOURCES), "w") { |f| @journal.sources.each { |source| f.puts(source.url) } }
  Oj.to_file(config_path(DGIT_JOURNAL), @journal, indent: 2)
end

#save_options ⇒ void

This method returns an undefined value.

Save the options to ‘.dgit/options`



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# File 'lib/dgit/core.rb', line 405

def save_options
  Oj.to_file(config_path(DGIT_OPTIONS), options)
end