Class: DicomS::CLI

Inherits:
Thor
  • Object
show all
Defined in:
lib/dicoms/cli.rb

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.exit_on_failure? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/dicoms/cli.rb', line 7

def self.exit_on_failure?
  true
end

Instance Method Details

#extract(dicom_dir) ⇒ Object 



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# File 'lib/dicoms/cli.rb', line 91

def extract(dicom_dir)000
  DICOM.logger.level = Logger::FATAL
  settings = {} # TODO: ...
  unless File.exists?(dicom_dir)
    raise Error, set_color("Directory not found: #{dicom_dir}", :red)
    say options
  end

  raw = options.raw
  if options.big
    raw = true
    big_endian = true
  elsif options.little
    raw = true
    little_endian = true
  end

  packer = DicomS.new(settings)
  packer.extract(
    dicom_dir,
    transfer: DicomS.transfer_options(options),
    output: options.output,
    raw: raw, big_endian: big_endian, little_endian: little_endian
  )
  # rescue => raise Error?
  0
end

#pack(dicom_dir) ⇒ Object 



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# File 'lib/dicoms/cli.rb', line 32

def pack(dicom_dir)
  DICOM.logger.level = Logger::FATAL
  strategy_parameters = {
    ignore_min: true
  }
  settings = {} # TODO: ...
  unless File.directory?(dicom_dir)
    raise Error, set_color("Directory not found: #{dicom_dir}", :red)
    say options
  end
  cmd_options = CommandOptions[
    settings: options.settings,
    settings_io: options.settings_io,
    output: options.output,
    tmp:  options.tmp,
    reorder: options.reorder,
    dicom_metadata: true
  ]
  packer = DicomS.new(settings)
  packer.pack dicom_dir, cmd_options
  # rescue => raise Error?
  0
end

#projection(dicom_dir) ⇒ Object 



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# File 'lib/dicoms/cli.rb', line 149

def projection(dicom_dir)
  DICOM.logger.level = Logger::FATAL
  settings = {} # TODO: ...
  unless File.directory?(dicom_dir)
    raise Error, set_color("Directory not found: #{dicom_dir}", :red)
    say options
  end
  if options.settings_io || options.settings
    cmd_options = CommandOptions[
      settings: options.settings,
      settings_io: options.settings_io,
      output: options.output,
      max_x_pixels: options.max_x_pixels && options.max_x_pixels.to_i,
      max_y_pixels: options.max_y_pixels && options.max_y_pixels.to_i,
      max_z_pixels: options.max_z_pixels && options.max_z_pixels.to_i,
      reorder: options.reorder,
    ]
  else
    cmd_options = CommandOptions[
      transfer: DicomS.transfer_options(options),
      output: options.output,
      axial: options.axial == 'axial' ? 'mip' : options.axial,
      sagittal: options.sagittal == 'sagittal' ? 'mip' : options.sagittal,
      coronal: options.coronal == 'coronal' ? 'mip' : options.coronal,
      max_x_pixels: options.max_x_pixels && options.max_x_pixels.to_i,
      max_y_pixels: options.max_y_pixels && options.max_y_pixels.to_i,
      max_z_pixels: options.max_z_pixels && options.max_z_pixels.to_i,
      reorder: options.reorder,
    ]
  end
  unless cmd_options.axial || options.sagittal || options.coronal
    raise Error, "Must specify at least one projection (axial/sagittal/coronal)"
  end
  packer = DicomS.new(settings)
  packer.projection(dicom_dir, cmd_options)
  # rescue => raise Error?
  0
end

#remap(dicom_dir) ⇒ Object 



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# File 'lib/dicoms/cli.rb', line 199

def remap(dicom_dir)
  DICOM.logger.level = Logger::FATAL
  settings = {} # TODO: ...
  unless File.directory?(dicom_dir)
    raise Error, set_color("Directory not found: #{dicom_dir}", :red)
    say options
  end
  packer = DicomS.new(settings)
  packer.remap(
    dicom_dir,
    transfer: DicomS.transfer_options(options),
    output: options.output
  )
  # rescue => raise Error?
  0
end

#stats(dicom_dir) ⇒ Object 



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# File 'lib/dicoms/cli.rb', line 120

def stats(dicom_dir)
  DICOM.logger.level = Logger::FATAL
  settings = {} # TODO: ...
  dicoms = DicomS.new(settings)
  stats = dicoms.stats dicom_dir
  puts "Aggregate values for #{stats[:n]} DICOM files:"
  puts "  Minimum level: #{stats[:min]}"
  puts "  Next minimum level: #{stats[:next_min]}"
  puts "  Maximum level: #{stats[:max]}"
  0
end

#unpack(dspack) ⇒ Object

TODO: parameters for dicom regeneration



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# File 'lib/dicoms/cli.rb', line 60

def unpack(dspack)
  DICOM.logger.level = Logger::FATAL
  unless File.file?(dspack)
    raise Error, set_color("File not found: #{dspack}", :red)
    say options
  end
  settings = {} # TODO: ...
  packer = DicomS.new(settings)
  packer.unpack(
    dspack,
    settings: options.settings,
    settings_io: options.settings_io,
    output: options.output,
    dicom_output: options.dicom
  )
  # rescue => raise Error?
  0
end

#version ⇒ Object 



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# File 'lib/dicoms/cli.rb', line 13

def version
  say "dicoms #{VERSION}"
end