Module: CodeRunner::Archer

Includes:
Moab
Defined in:
lib/coderunner/system_modules/archer.rb

Instance Method Summary collapse

Methods included from Moab

#batch_script_file, #cancel_job, #error_file, #execute, #hours_minutes_seconds, #nodes, #nprocstot, #output_file, #ppn, #ppn_checks, #queue_status, #run_command

Instance Method Details

#batch_script ⇒ Object 



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# File 'lib/coderunner/system_modules/archer.rb', line 6

def batch_script
		raise "Please specify project" unless @project
		(eputs "Warning: number of wall mins is not recommended (20, 60, 180, 360, 720 recomended)"; sleep 0.2) unless [20, 60, 180, 360, 720].include? @wall_mins.to_i

	ppn_checks
	hours, mins, secs = hours_minutes_seconds
<<EOF 
#!/bin/bash --login 
#PBS -N #{executable_name}.#{job_identifier}
#PBS -l select=#{nodes}
#PBS -l walltime=#{sprintf("%02d:%02d:%02d", hours, mins, secs)}
#{@project ? "#PBS -A #@project" : ""}

### start of jobscript 
cd $PBS_O_WORKDIR 
echo "workdir: $PBS_O_WORKDIR" 
#{code_run_environment}

echo "Submitting #{nodes}x#{ppn} job on #{CodeRunner::SYS} for project #@project..."
EOF
end

#get_run_status(job_no, current_status) ⇒ Object 



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# File 'lib/coderunner/system_modules/archer.rb', line 35

def get_run_status(job_no, current_status)
	if ((prefix = ENV['CODE_RUNNER_LAUNCHER']).size > 0 rescue false)
		if current_status =~ Regexp.new(job_no.to_s)
			@running = true
			return :Running
		else
			@running = false
			return :Unknown
		end
	end
	line = current_status.split(/\n/).grep(Regexp.new(job_no.to_s))[0]
	unless line
		return :Unknown
	else 
		if line =~ /\sQ\s/
			return :Queueing
		elsif line =~ /\sR\s/
			return :Running
		elsif line =~ /\sH\s/
			return :Queueing
		elsif line =~ /\s[CE]\s/
			@running=false
			return :Unknown
		else
			ep 'line', line
			raise 'Could not get run status'
		end
	end
end

#max_ppn ⇒ Object 



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# File 'lib/coderunner/system_modules/archer.rb', line 28

def max_ppn
  24
end

#mpi_prog ⇒ Object 



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# File 'lib/coderunner/system_modules/archer.rb', line 32

def  mpi_prog
"aprun -n #{ppn*nodes}"
end