Module: CodeRunner::Iridis

Includes:
Moab
Defined in:
lib/coderunner/system_modules/iridis.rb

Instance Method Summary collapse

Methods included from Moab

#batch_script_file, #cancel_job, #error_file, #get_run_status, #hours_minutes_seconds, #nodes, #nprocstot, #output_file, #ppn, #ppn_checks, #queue_status, #run_command

Instance Method Details

#batch_script ⇒ Object 



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# File 'lib/coderunner/system_modules/iridis.rb', line 5

def batch_script
  raise "Please specify project" unless @project
  super
end

#execute ⇒ Object 



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# File 'lib/coderunner/system_modules/iridis.rb', line 15

def execute
    if ((prefix = ENV['CODE_RUNNER_LAUNCHER']).size > 0 rescue false)
      launch_id = "#{Time.now.to_i}#{$$}"
      fname = ENV['HOME'] + "/.coderunner_to_launch_#{prefix}/#{launch_id}"
      File.open(fname + '.start', 'w'){|file| file.puts "cd #{Dir.pwd};#{run_command}"}
      sleep 1 until FileTest.exist? fname + '.pid'
      pid = File.read(fname + '.pid').to_i
      FileUtils.rm fname + '.pid'
      return pid
    else
      File.open(batch_script_file, 'w'){|file| file.puts batch_script + run_command + "\n"}
      pid = %x[qsub -q #@project #{batch_script_file}].to_i
    end
end

#max_ppn ⇒ Object 



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# File 'lib/coderunner/system_modules/iridis.rb', line 9

def max_ppn
  12
end

#mpi_prog ⇒ Object 



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# File 'lib/coderunner/system_modules/iridis.rb', line 12

def mpi_prog
  "mpirun -np #{nprocstot}"
end