Module: Chem::SMBL

Defined in:
lib/chem/db/smbl.rb

Defined Under Namespace

Classes: Model, SMBLReaction, Specie

Instance Method Summary collapse

Instance Method Details

#make_SPN(m, out) ⇒ Object 



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# File 'lib/chem/db/smbl.rb', line 63

def make_SPN(m, out)
  out.puts "digraph SPN {"
  tab = 3
  m.species.keys.each do |k|
    out.puts "%s \"%s\" [shape=circle];" % [" " * tab, k]
  end
  out.puts
  m.reactions.each do |r|
    out.puts "%s \"%s\" [shape=box]" % [" " * tab, r.name]
    r.reactants.each do |r_sp|
      out.puts "%s \"%s\" -> \"%s\" [label=\"%s\"];" % [" " * tab, r_sp[0].name, r.name, r_sp[1]]
    end
    out.puts
    r.products.each do |r_sp|
      out.puts "%s \"%s\" -> \"%s\"" % [" " * tab, r.name, r_sp[0].name]
    end
  end
  out.puts "}"
  out.close
end