Module: CancerPathologyDataSharingTestKit::BundleParse

Extended by:
Forwardable
Included in:
ContentBundleValidationTest, DiagnosticReportValidationTest, EncounterValidationTest, PatientValidationTest, PractitionerRoleValidationTest, ServiceRequestValidationTest, SpecimenValidationTest
Defined in:
lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb

Constant Summary collapse

PE_BUNDLE_SLICE_RESOURCES =

ResourcesTypes in Slicing with Profiles

{
  'Patient' => 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient',
  'Encounter' => 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter',
  'DiagnosticReport' => 'http://hl7.org/fhir/us/cancer-reporting/StructureDefinition/us-pathology-diagnostic-report',
  'Specimen' => 'http://hl7.org/fhir/us/cancer-reporting/StructureDefinition/us-pathology-specimen',
  'ServiceRequest' => 'http://hl7.org/fhir/us/cancer-reporting/StructureDefinition/us-pathology-service-request',
  'PractitionerRole' => 'http://hl7.org/fhir/us/cancer-reporting/StructureDefinition/us-pathology-related-practitioner-role'
}.freeze

Instance Method Summary collapse

Instance Method Details

#clear_unresolved_references ⇒ Object 



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# File 'lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb', line 9

def clear_unresolved_references
  @unresolved_references = []
end

#filter_exchange_bundle_resources(parsed_bundle) ⇒ Object

Only returns the resources from the parsed bundle that match Pathology Exchange type



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# File 'lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb', line 45

def filter_exchange_bundle_resources(parsed_bundle)
  parsed_bundle.select { |key| pe_bundle_resource_types.include?(key) }
end

#find_resource_in_bundle(reference, bundle) ⇒ Object 



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# File 'lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb', line 49

def find_resource_in_bundle(reference, bundle)
  bundle.entry.find { |res| res.resource.id == reference.split('/').last && res.resource.resourceType == reference.split('/').first }&.resource
end

#parse_bundle(bundle) ⇒ Object

Method for translating received bundle into a hash of resources



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# File 'lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb', line 28

def parse_bundle(bundle)
  # TODO: For now, use ResourceType as Key, but determine if profile is indeed better?
  # But with openslicing, we don't have too many options here...
  parsed_bundle ||= {}
  bundle.entry.each do |entry|
    current_resource = entry.resource
    next if current_resource.is_a?(FHIR::Reference)

    # Not a reference, then just add the resoure to parsed bundle
    parsed_bundle[current_resource.resourceType] ||= []
    parsed_bundle[current_resource.resourceType] << current_resource
  end

  parsed_bundle
end

#pe_bundle_resource_types ⇒ Object 



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# File 'lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb', line 23

def pe_bundle_resource_types
  PE_BUNDLE_SLICE_RESOURCES.keys
end

#unresolved_references ⇒ Object 



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# File 'lib/cancer_pathology_data_sharing_test_kit/bundle_parse.rb', line 5

def unresolved_references
  @unresolved_references ||= []
end