Class: Bio::CodonTable

Inherits:

Object

• Object
• Bio::CodonTable

Defined in:

lib/bio/data/codontable.rb,
lib/bio/data/codontable.rb

Constant Summary

DEFINITIONS =

{

  1	=> "Standard (Eukaryote)",
  2	=> "Vertebrate Mitochondrial",
  3	=> "Yeast Mitochondorial",
  4	=> "Mold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/Spiroplasma",
  5	=> "Invertebrate Mitochondrial",
  6	=> "Ciliate Macronuclear and Dasycladacean",
  9	=> "Echinoderm Mitochondrial",
  10	=> "Euplotid Nuclear",
  11	=> "Bacteria",
  12	=> "Alternative Yeast Nuclear",
  13	=> "Ascidian Mitochondrial",
  14	=> "Flatworm Mitochondrial",
  15	=> "Blepharisma Macronuclear",
  16	=> "Chlorophycean Mitochondrial",
  21	=> "Trematode Mitochondrial",
  22	=> "Scenedesmus obliquus mitochondrial",
  23	=> "Thraustochytrium Mitochondrial",

}

STARTS =

{
  1	=> %w(ttg ctg atg gtg),		# gtg added (cf. NCBI #SG1 document)
  2	=> %w(att atc ata atg gtg),
  3	=> %w(ata atg),
  4	=> %w(tta ttg ctg att atc ata atg gtg),
  5	=> %w(ttg att atc ata atg gtg),
  6	=> %w(atg),
  9	=> %w(atg gtg),
  10	=> %w(atg),
  11	=> %w(ttg ctg att atc ata atg gtg),
  12	=> %w(ctg atg),
  13	=> %w(atg),
  14	=> %w(atg),
  15	=> %w(atg),
  16	=> %w(atg),
  21	=> %w(atg gtg),
  22	=> %w(atg),
  23	=> %w(att atg gtg),
}

STOPS =

{
  1	=> %w(taa tag tga),
  2	=> %w(taa tag aga agg),
  3	=> %w(taa tag),
  4	=> %w(taa tag),
  5	=> %w(taa tag),
  6	=> %w(tga),
  9	=> %w(taa tag),
  10	=> %w(taa tag),
  11	=> %w(taa tag tga),
  12	=> %w(taa tag tga),
  13	=> %w(taa tag),
  14	=> %w(tag),
  15	=> %w(taa tga),
  16	=> %w(taa tga),
  21	=> %w(taa tag),
  22	=> %w(tca taa tga),
  23	=> %w(tta taa tag tga),
}

TABLES =

{

  # codon table 1
  1 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 2
  2 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'M', 'aca' => 'T', 'aaa' => 'K', 'aga' => '*',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => '*',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },


  # codon table 3
  3 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'T', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'T', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'T', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'T', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'M', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 4
  4 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 5
  5 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'M', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'S',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'S',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 6
  6 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => 'Q', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => 'Q', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 9
  9 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'N', 'aga' => 'S',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'S',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 10
  10 => {

    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'C',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 11
  11 => {
    'ttt' => 'F', 'tct' => 'S', 'tat'	=> 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac'	=> 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa'	=> '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag'	=> '*', 'tgg' => 'W',
     	
    'ctt' => 'L', 'cct' => 'P', 'cat'	=> 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac'	=> 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa'	=> 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag'	=> 'Q', 'cgg' => 'R',
     	
    'att' => 'I', 'act' => 'T', 'aat'	=> 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac'	=> 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa'	=> 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag'	=> 'K', 'agg' => 'R',
     	
    'gtt' => 'V', 'gct' => 'A', 'gat'	=> 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac'	=> 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa'	=> 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag'	=> 'E', 'ggg' => 'G',
  },

  # codon table 12
  12 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'S', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 13
  13 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'M', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'G',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'G',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 14
  14 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => 'Y', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'N', 'aga' => 'S',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'S',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 15
  15 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => 'Q', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 16
  16 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => 'L', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 21
  21 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => 'S', 'taa' => '*', 'tga' => 'W',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'M', 'aca' => 'T', 'aaa' => 'N', 'aga' => 'S',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'S',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 22
  22 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => 'L', 'tca' => '*', 'taa' => '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => 'L', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

  # codon table 23
  23 => {
    'ttt' => 'F', 'tct' => 'S', 'tat' => 'Y', 'tgt' => 'C',
    'ttc' => 'F', 'tcc' => 'S', 'tac' => 'Y', 'tgc' => 'C',
    'tta' => '*', 'tca' => 'S', 'taa' => '*', 'tga' => '*',
    'ttg' => 'L', 'tcg' => 'S', 'tag' => '*', 'tgg' => 'W',

    'ctt' => 'L', 'cct' => 'P', 'cat' => 'H', 'cgt' => 'R',
    'ctc' => 'L', 'ccc' => 'P', 'cac' => 'H', 'cgc' => 'R',
    'cta' => 'L', 'cca' => 'P', 'caa' => 'Q', 'cga' => 'R',
    'ctg' => 'L', 'ccg' => 'P', 'cag' => 'Q', 'cgg' => 'R',

    'att' => 'I', 'act' => 'T', 'aat' => 'N', 'agt' => 'S',
    'atc' => 'I', 'acc' => 'T', 'aac' => 'N', 'agc' => 'S',
    'ata' => 'I', 'aca' => 'T', 'aaa' => 'K', 'aga' => 'R',
    'atg' => 'M', 'acg' => 'T', 'aag' => 'K', 'agg' => 'R',

    'gtt' => 'V', 'gct' => 'A', 'gat' => 'D', 'ggt' => 'G',
    'gtc' => 'V', 'gcc' => 'A', 'gac' => 'D', 'ggc' => 'G',
    'gta' => 'V', 'gca' => 'A', 'gaa' => 'E', 'gga' => 'G',
    'gtg' => 'V', 'gcg' => 'A', 'gag' => 'E', 'ggg' => 'G',
  },

}

AMBIGUITY_CODON_TABLES =

{
1 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "tra"=>"*", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
2 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"M", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atr"=>"M", "aga"=>"*", "agt"=>"S", "agg"=>"*", "agc"=>"S", "agy"=>"S", "agr"=>"*", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L"}, 
3 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"M", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atr"=>"M", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"T", "ctt"=>"T", "ctg"=>"T", "ctc"=>"T", "cty"=>"T", "ctr"=>"T", "ctw"=>"T", "cts"=>"T", "ctk"=>"T", "ctm"=>"T", "ctb"=>"T", "ctd"=>"T", "cth"=>"T", "ctv"=>"T", "ctn"=>"T", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
4 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
5 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"M", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atr"=>"M", "aga"=>"S", "agt"=>"S", "agg"=>"S", "agc"=>"S", "agy"=>"S", "agr"=>"S", "agw"=>"S", "ags"=>"S", "agk"=>"S", "agm"=>"S", "agb"=>"S", "agd"=>"S", "agh"=>"S", "agv"=>"S", "agn"=>"S", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L"}, 
6 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"Q", "tat"=>"Y", "tag"=>"Q", "tac"=>"Y", "tay"=>"Y", "tar"=>"Q", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yaa"=>"Q", "yag"=>"Q", "yar"=>"Q", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
9 =>
{"aaa"=>"N", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aaw"=>"N", "aam"=>"N", "aah"=>"N", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"S", "agt"=>"S", "agg"=>"S", "agc"=>"S", "agy"=>"S", "agr"=>"S", "agw"=>"S", "ags"=>"S", "agk"=>"S", "agm"=>"S", "agb"=>"S", "agd"=>"S", "agh"=>"S", "agv"=>"S", "agn"=>"S", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L"}, 
10 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"C", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgw"=>"C", "tgm"=>"C", "tgh"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
11 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "tra"=>"*", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
12 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "tra"=>"*", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"S", "ctc"=>"L", "cty"=>"L", "ctw"=>"L", "ctm"=>"L", "cth"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
13 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"M", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atr"=>"M", "aga"=>"G", "agt"=>"S", "agg"=>"G", "agc"=>"S", "agy"=>"S", "agr"=>"G", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "rga"=>"G", "rgg"=>"G", "rgr"=>"G"}, 
14 =>
{"aaa"=>"N", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aaw"=>"N", "aam"=>"N", "aah"=>"N", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"S", "agt"=>"S", "agg"=>"S", "agc"=>"S", "agy"=>"S", "agr"=>"S", "agw"=>"S", "ags"=>"S", "agk"=>"S", "agm"=>"S", "agb"=>"S", "agd"=>"S", "agh"=>"S", "agv"=>"S", "agn"=>"S", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"Y", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "taw"=>"Y", "tam"=>"Y", "tah"=>"Y", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L"}, 
15 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"Q", "tac"=>"Y", "tay"=>"Y", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "tra"=>"*", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yag"=>"Q", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
16 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"L", "tac"=>"Y", "tay"=>"Y", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "tra"=>"*", "twg"=>"L", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
21 =>
{"aaa"=>"N", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aaw"=>"N", "aam"=>"N", "aah"=>"N", "ata"=>"M", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atr"=>"M", "aga"=>"S", "agt"=>"S", "agg"=>"S", "agc"=>"S", "agy"=>"S", "agr"=>"S", "agw"=>"S", "ags"=>"S", "agk"=>"S", "agm"=>"S", "agb"=>"S", "agd"=>"S", "agh"=>"S", "agv"=>"S", "agn"=>"S", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"W", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tgr"=>"W", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L"}, 
22 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"L", "tac"=>"Y", "tay"=>"Y", "tta"=>"L", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "ttr"=>"L", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"*", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcs"=>"S", "tck"=>"S", "tcb"=>"S", "tra"=>"*", "twg"=>"L", "tsa"=>"*", "tma"=>"*", "tva"=>"*", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "yta"=>"L", "ytg"=>"L", "ytr"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
23 =>
{"aaa"=>"K", "aat"=>"N", "aag"=>"K", "aac"=>"N", "aay"=>"N", "aar"=>"K", "ata"=>"I", "att"=>"I", "atg"=>"M", "atc"=>"I", "aty"=>"I", "atw"=>"I", "atm"=>"I", "ath"=>"I", "aga"=>"R", "agt"=>"S", "agg"=>"R", "agc"=>"S", "agy"=>"S", "agr"=>"R", "aca"=>"T", "act"=>"T", "acg"=>"T", "acc"=>"T", "acy"=>"T", "acr"=>"T", "acw"=>"T", "acs"=>"T", "ack"=>"T", "acm"=>"T", "acb"=>"T", "acd"=>"T", "ach"=>"T", "acv"=>"T", "acn"=>"T", "taa"=>"*", "tat"=>"Y", "tag"=>"*", "tac"=>"Y", "tay"=>"Y", "tar"=>"*", "tta"=>"*", "ttt"=>"F", "ttg"=>"L", "ttc"=>"F", "tty"=>"F", "tga"=>"*", "tgt"=>"C", "tgg"=>"W", "tgc"=>"C", "tgy"=>"C", "tca"=>"S", "tct"=>"S", "tcg"=>"S", "tcc"=>"S", "tcy"=>"S", "tcr"=>"S", "tcw"=>"S", "tcs"=>"S", "tck"=>"S", "tcm"=>"S", "tcb"=>"S", "tcd"=>"S", "tch"=>"S", "tcv"=>"S", "tcn"=>"S", "tra"=>"*", "twa"=>"*", "tka"=>"*", "tda"=>"*", "gaa"=>"E", "gat"=>"D", "gag"=>"E", "gac"=>"D", "gay"=>"D", "gar"=>"E", "gta"=>"V", "gtt"=>"V", "gtg"=>"V", "gtc"=>"V", "gty"=>"V", "gtr"=>"V", "gtw"=>"V", "gts"=>"V", "gtk"=>"V", "gtm"=>"V", "gtb"=>"V", "gtd"=>"V", "gth"=>"V", "gtv"=>"V", "gtn"=>"V", "gga"=>"G", "ggt"=>"G", "ggg"=>"G", "ggc"=>"G", "ggy"=>"G", "ggr"=>"G", "ggw"=>"G", "ggs"=>"G", "ggk"=>"G", "ggm"=>"G", "ggb"=>"G", "ggd"=>"G", "ggh"=>"G", "ggv"=>"G", "ggn"=>"G", "gca"=>"A", "gct"=>"A", "gcg"=>"A", "gcc"=>"A", "gcy"=>"A", "gcr"=>"A", "gcw"=>"A", "gcs"=>"A", "gck"=>"A", "gcm"=>"A", "gcb"=>"A", "gcd"=>"A", "gch"=>"A", "gcv"=>"A", "gcn"=>"A", "caa"=>"Q", "cat"=>"H", "cag"=>"Q", "cac"=>"H", "cay"=>"H", "car"=>"Q", "cta"=>"L", "ctt"=>"L", "ctg"=>"L", "ctc"=>"L", "cty"=>"L", "ctr"=>"L", "ctw"=>"L", "cts"=>"L", "ctk"=>"L", "ctm"=>"L", "ctb"=>"L", "ctd"=>"L", "cth"=>"L", "ctv"=>"L", "ctn"=>"L", "cga"=>"R", "cgt"=>"R", "cgg"=>"R", "cgc"=>"R", "cgy"=>"R", "cgr"=>"R", "cgw"=>"R", "cgs"=>"R", "cgk"=>"R", "cgm"=>"R", "cgb"=>"R", "cgd"=>"R", "cgh"=>"R", "cgv"=>"R", "cgn"=>"R", "cca"=>"P", "cct"=>"P", "ccg"=>"P", "ccc"=>"P", "ccy"=>"P", "ccr"=>"P", "ccw"=>"P", "ccs"=>"P", "cck"=>"P", "ccm"=>"P", "ccb"=>"P", "ccd"=>"P", "cch"=>"P", "ccv"=>"P", "ccn"=>"P", "ytg"=>"L", "mga"=>"R", "mgg"=>"R", "mgr"=>"R"}, 
}

Instance Attribute Summary

• #definition ⇒ Object

  Accessor methods for the name of the currently selected table.

• #start ⇒ Object

  Accessor methods for an Array which contains a list of start or stop codons respectively.

• #stop ⇒ Object

  Accessor methods for an Array which contains a list of start or stop codons respectively.

• #table ⇒ Object

  Accessor methods for a Hash of the currently selected codon table.

Class Method Summary

• .[](i) ⇒ Object

  Select a codon table by number.

• .copy(i) ⇒ Object

  Similar to Bio::CodonTable but returns a copied codon table.

Instance Method Summary

• #[](codon) ⇒ Object

  Translate a codon into a relevant amino acid.

• #[]=(codon, aa) ⇒ Object

  Modify the codon table.

• #each(&block) ⇒ Object

  Iterates on codon table hash.

• #gen_ambiguity_map(hash) ⇒ Object

  Compute possible ambiguity nucleotide code to amino acid conversion the codon is defined when all decomposed codon translates to the same amino acid / stop codon.

• #initialize(hash, definition = nil, start = [], stop = [], atable = nil) ⇒ CodonTable constructor

  Create your own codon table by giving a Hash table of codons and relevant amino acids.

• #revtrans(aa) ⇒ Object

  Reverse translation of a amino acid into a list of relevant codons.

• #start_codon?(codon) ⇒ Boolean

  Returns true if the codon is a start codon in the currently selected codon table, otherwise false.

• #stop_codon?(codon) ⇒ Boolean

  Returns true if the codon is a stop codon in the currently selected codon table, otherwise false.

Constructor Details

#initialize(hash, definition = nil, start = [], stop = [], atable = nil) ⇒ CodonTable

Create your own codon table by giving a Hash table of codons and relevant amino acids. You can also able to define the table’s name as a second argument.

Two Arrays ‘start’ and ‘stop’ can be specified which contains a list of start and stop codons used by ‘start_codon?’ and ‘stop_codon?’ methods.

# File 'lib/bio/data/codontable.rb', line 78

def initialize(hash, definition = nil, start = [], stop = [], atable = nil)
  @table = hash
  if atable == nil
    @atable = gen_ambiguity_map(hash)
  else
    @atable = atable
  end
  @definition = definition
  @start = start
  @stop = stop.empty? ? generate_stop : stop
end

Instance Attribute Details

#definition ⇒ Object

Accessor methods for the name of the currently selected table.

# File 'lib/bio/data/codontable.rb', line 94

def definition
  @definition
end

#start ⇒ Object

Accessor methods for an Array which contains a list of start or stop codons respectively.

# File 'lib/bio/data/codontable.rb', line 98

def start
  @start
end

#stop ⇒ Object

Accessor methods for an Array which contains a list of start or stop codons respectively.

# File 'lib/bio/data/codontable.rb', line 98

def stop
  @stop
end

#table ⇒ Object

Accessor methods for a Hash of the currently selected codon table.

# File 'lib/bio/data/codontable.rb', line 91

def table
  @table
end

Class Method Details

.[](i) ⇒ Object

Select a codon table by number. This method will return one of the hard coded codon tables in this class as a Bio::CodonTable object.

# File 'lib/bio/data/codontable.rb', line 51

def self.[](i)
  hash = TABLES[i]
  raise "ERROR: Unknown codon table No.#{i}" unless hash
  if AMBIGUITY_CODON_TABLES != nil
    atable = AMBIGUITY_CODON_TABLES[i]
  else
    atable = nil
  end
  definition = DEFINITIONS[i]
  start = STARTS[i]
  stop = STOPS[i]
  self.new(hash, definition, start, stop, atable)
end

.copy(i) ⇒ Object

Similar to Bio::CodonTable but returns a copied codon table. You can modify the codon table without influencing hard coded tables.

# File 'lib/bio/data/codontable.rb', line 67

def self.copy(i)
  ct = self[i]
  return Marshal.load(Marshal.dump(ct))
end

Instance Method Details

#[](codon) ⇒ Object

Translate a codon into a relevant amino acid. This method is used for translating a DNA sequence into amino acid sequence.

# File 'lib/bio/data/codontable.rb', line 146

def [](codon)
  @atable=gen_ambiguity_map(@table) if @atable == nil
  @atable[codon]
end

#[]=(codon, aa) ⇒ Object

Modify the codon table. Use with caution as it may break hard coded tables. If you want to modify existing table, you should use copy method instead of [] method to generate CodonTable object to be modified.

# This is OK.
table = Bio::CodonTable.copy(1)
table['tga'] = 'U'

# Not recommended as it overrides the hard coded table
table = Bio::CodonTable[1]
table['tga'] = 'U'

# File 'lib/bio/data/codontable.rb', line 163

def []=(codon, aa)
  @table[codon] = aa
  @atable = nil
end

#each(&block) ⇒ Object

Iterates on codon table hash.

table = Bio::CodonTable[1]
table.each do |codon, aa|
  puts "#{codon} -- #{aa}"
 end

# File 'lib/bio/data/codontable.rb', line 175

def each(&block)
  @table.each(&block)
end

#gen_ambiguity_map(hash) ⇒ Object

Compute possible ambiguity nucleotide code to amino acid conversion the codon is defined when all decomposed codon translates to the same amino acid / stop codon

# File 'lib/bio/data/codontable.rb', line 103

def gen_ambiguity_map(hash)
  nucleotide_sets={
    'a'       => ['a'],
    't'       => ['t'],
    'g'       => ['g'],
    'c'       => ['c'],

    'y'       => ['t','c'],
    'r'       => ['a','g'],
    'w'       => ['a','t'],
    's'       => ['g','c'],
    'k'       => ['t','g'],
    'm'       => ['a','c'],

    'b'       => ['t','g','c'],
    'd'       => ['a','t','g'],
    'h'       => ['a','t','c'],
    'v'       => ['a','g','c'],

    'n'       => ['a','t','g','c'],
  }
  atable=Hash.new
  nucleotide_sets.keys.each{|n1|
    nucleotide_sets.keys.each{|n2|
      nucleotide_sets.keys.each{|n3|
        a = Array.new
        nucleotide_sets[n1].each{|c1|
          nucleotide_sets[n2].each{|c2|
            nucleotide_sets[n3].each{|c3|
              a << hash["#{c1}#{c2}#{c3}"]
            }
          }
        }
        a.uniq!
        atable["#{n1}#{n2}#{n3}"] = a.to_a[0] if a.size== 1
      }
    }
  }
  atable
end

#revtrans(aa) ⇒ Object

Reverse translation of a amino acid into a list of relevant codons.

table = Bio::CodonTable[1]
table.revtrans("A")	# => ["gcg", "gct", "gca", "gcc"]

# File 'lib/bio/data/codontable.rb', line 184

def revtrans(aa)
  unless (defined? @reverse) && @reverse
    @reverse = {}
    @table.each do |k, v|
      @reverse[v] ||= []
      @reverse[v] << k
    end
  end
  @reverse[aa.upcase]
end

#start_codon?(codon) ⇒ Boolean

Returns true if the codon is a start codon in the currently selected codon table, otherwise false.

Returns:

• (Boolean)

# File 'lib/bio/data/codontable.rb', line 197

def start_codon?(codon)
  @start.include?(codon.downcase)
end

#stop_codon?(codon) ⇒ Boolean

Returns true if the codon is a stop codon in the currently selected codon table, otherwise false.

Returns:

• (Boolean)

# File 'lib/bio/data/codontable.rb', line 203

def stop_codon?(codon)
  @stop.include?(codon.downcase)
end