Class: Bio::Spidey::Report::Segment

Inherits:
Object
  • Object
show all
Defined in:
lib/bio/appl/spidey/report.rb

Overview

Segment informations of a segment pair.

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(pos_st, pos_ed, strand = nil, seq = nil) ⇒ Segment

Creates a new Segment object. It is designed to be called internally from Bio::Spidey::Report::* classes. Users shall not call it directly.



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# File 'lib/bio/appl/spidey/report.rb', line 263

def initialize(pos_st, pos_ed, strand = nil, seq = nil)
  @from   = pos_st ? pos_st.to_i : nil
  @to     = pos_ed ? pos_ed.to_i : nil
  @strand = strand
  @seq    = seq
end

Instance Attribute Details

#from ⇒ Object (readonly)

start position



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# File 'lib/bio/appl/spidey/report.rb', line 271

def from
  @from
end

#seq ⇒ Object (readonly)

sequence data



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# File 'lib/bio/appl/spidey/report.rb', line 280

def seq
  @seq
end

#strand ⇒ Object (readonly)

strand information



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# File 'lib/bio/appl/spidey/report.rb', line 277

def strand
  @strand
end

#to ⇒ Object (readonly)

end position



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# File 'lib/bio/appl/spidey/report.rb', line 274

def to
  @to
end