Class: Bio::SQL::Seqfeature

Inherits:

Object
ActiveRecord::Base
DummyBase
Bio::SQL::Seqfeature

Defined in:: lib/bio/io/biosql/ar-biosql.rb

Instance Method Summary collapse

#sequence ⇒ Object

get the subsequence described by the locations objects.
#translate(*args) ⇒ Object

translate the subsequences represented by the feature and its locations not considering the qualifiers Return a Bio::Sequence::AA object.

Instance Method Details

#sequence ⇒ `Object`

get the subsequence described by the locations objects



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# File 'lib/bio/io/biosql/ar-biosql.rb', line 174

def sequence
  return self.locations.inject(Bio::Sequence::NA.new("")){|seq, location| seq<<location.sequence}
end

#translate(*args) ⇒ `Object`

translate the subsequences represented by the feature and its locations not considering the qualifiers Return a Bio::Sequence::AA object



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# File 'lib/bio/io/biosql/ar-biosql.rb', line 181

def translate(*args)
  self.sequence.translate(*args)
end