Class: Bio::DDBJ

Inherits:

GenBank

• Object
• DB
• NCBIDB
• GenBank
• Bio::DDBJ

Defined in:

lib/bio/db/genbank/ddbj.rb

Overview

Bio::DDBJ is deprecated. Use Bio::GenBank.

Constant Summary

Constants included from NCBIDB::Common

NCBIDB::Common::DELIMITER, NCBIDB::Common::TAGSIZE

Instance Method Summary

• #initialize(str) ⇒ DDBJ constructor

  Bio::DDBJ is deprecated.

Methods inherited from GenBank

#basecount, #circular, #classification, #date, #date_modified, #division, #each_cds, #each_gene, #entry_id, #length, #locus, #natype, #seq, #seq_len, #strand, #strandedness, #to_biosequence

Methods included from NCBIDB::Common

#acc_version, #accession, #accessions, #comment, #common_name, #definition, #features, #gi, #keywords, #locus, #nid, #organism, #origin, #references, #segment, #source, #taxonomy, #version, #versions

Methods inherited from DB

#entry_id, #exists?, #fetch, #get, open, #tags

Constructor Details

#initialize(str) ⇒ DDBJ

Bio::DDBJ is deprecated. Use Bio::GenBank.

# File 'lib/bio/db/genbank/ddbj.rb', line 18

def initialize(str)
  warn "Bio::DDBJ is deprecated. Use Bio::GenBank."
  super(str)
end