Class: Bio::Velvet::Underground::Graph::NodedRead

Inherits:

Object

• Object
• Bio::Velvet::Underground::Graph::NodedRead

Defined in:

lib/bio-velvet_underground/graph.rb

Instance Attribute Summary

• #direction ⇒ Object

  Returns the value of attribute direction.

Instance Method Summary

• #initialize(short_read_struct, direction) ⇒ NodedRead constructor

  A new instance of NodedRead.

• #offset_from_start_of_node ⇒ Object
• #read_id ⇒ Object
• #start_coord ⇒ Object

Constructor Details

#initialize(short_read_struct, direction) ⇒ NodedRead

Returns a new instance of NodedRead.

# File 'lib/bio-velvet_underground/graph.rb', line 172

def initialize(short_read_struct, direction)
  @internal_short_read_struct = short_read_struct
  @direction = direction
end

Instance Attribute Details

#direction ⇒ Object

Returns the value of attribute direction.

# File 'lib/bio-velvet_underground/graph.rb', line 170

def direction
  @direction
end

Instance Method Details

#offset_from_start_of_node ⇒ Object

# File 'lib/bio-velvet_underground/graph.rb', line 181

def offset_from_start_of_node
  @offset_from_start_of_node ||= @internal_short_read_struct[:position]
end

#read_id ⇒ Object

# File 'lib/bio-velvet_underground/graph.rb', line 177

def read_id
  @read_id ||= @internal_short_read_struct[:readID]
end

#start_coord ⇒ Object

# File 'lib/bio-velvet_underground/graph.rb', line 185

def start_coord
  @start_coord ||= @internal_short_read_struct[:offset]
end