Class: Bio::DB::Pileup

Inherits:

Object

• Object
• Bio::DB::Pileup

Defined in:

lib/bio/db/pileup_iterator.rb

Instance Attribute Summary

• #reads ⇒ Object

  Bio::DB::PileupIterator::PileupRead objects that occur at this position.

Instance Method Summary

• #num_deletions ⇒ Object

Instance Attribute Details

#reads ⇒ Object

Bio::DB::PileupIterator::PileupRead objects that occur at this position

# File 'lib/bio/db/pileup_iterator.rb', line 5

def reads
  @reads
end

Instance Method Details

#num_deletions ⇒ Object

# File 'lib/bio/db/pileup_iterator.rb', line 7

def num_deletions
  return read_bases.gsub(/[^\*]/,'').length
end