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# File 'lib/bio-locus/store.rb', line 4
def Store.run(options)
invert_match = options[:invert_match]
store = DbMapper.factory(options)
count = count_new = count_dup = 0
STDIN.each_line do | line |
Keys::each_key(line,options) do | key |
has_match = lambda {
if invert_match
not store[key]
else
store[key]
end
}
if not has_match.call
count_new += 1
store[key] = true
else
count_dup += 1
if options[:debug]
$stderr.print "Store hit: <#{key}>\n"
end
end
count += 1
$stderr.print '.' if (count % 1_000_000) == 0 if not options[:quiet]
next
end
end
store.close
$stderr.print "Stored #{count_new} positions out of #{count} in #{options[:db]} (#{count_dup} duplicate hits)\n" if !options[:quiet]
end
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