Class: Bio::HMMER::HMMER3::Hit

Inherits:
Object
  • Object
show all
Defined in:
lib/bio/appl/hmmer/hmmer3/tabular_report.rb

Overview

class Report

Direct Known Subclasses

PerDomainHit, PerSequenceHit

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize ⇒ Hit

Returns a new instance of Hit.

Raises:

  • (NotImplementedError) 


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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 71

def initialize
  # This is an abstract class. Prevents 'new' being called on this class
  # and force implementation of 'initialize' in inheriting classes.
  raise NotImplementedError
end

Instance Attribute Details

#full_sequence_bias ⇒ Object (readonly)

Returns the value of attribute full_sequence_bias.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 83

def full_sequence_bias
  @full_sequence_bias
end

#full_sequence_e_value ⇒ Object (readonly)

Returns the value of attribute full_sequence_e_value.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 81

def full_sequence_e_value
  @full_sequence_e_value
end

#full_sequence_score ⇒ Object (readonly)

Returns the value of attribute full_sequence_score.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 82

def full_sequence_score
  @full_sequence_score
end

#query_accession ⇒ Object (readonly)

Returns the value of attribute query_accession.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 80

def query_accession
  @query_accession
end

#query_name ⇒ Object (readonly)

Returns the value of attribute query_name.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 79

def query_name
  @query_name
end

#target_accession ⇒ Object (readonly)

Returns the value of attribute target_accession.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 77

def target_accession
  @target_accession
end

#target_description ⇒ Object (readonly)

Returns the value of attribute target_description.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 78

def target_description
  @target_description
end

#target_name ⇒ Object (readonly)

Returns the value of attribute target_name.



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# File 'lib/bio/appl/hmmer/hmmer3/tabular_report.rb', line 76

def target_name
  @target_name
end