Class: Bio::DB::Fasta::Region

Inherits:
Object
  • Object
show all
Defined in:
lib/bio-faidx/faidx.rb,
lib/bio-faidx/faidx.rb

Instance Method Summary collapse

Instance Method Details

#joinRegion(other) ⇒ Object 



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# File 'lib/bio-faidx/faidx.rb', line 77

def joinRegion (other)
	return nil unless self.overlaps(other)
	out = self.clone 
	out.start = other.start if other.start < out.start
	out.end = other.end if other.end > out.end
	return out 
end

#overlap_in_set(set) ⇒ Object 



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# File 'lib/bio-faidx/faidx.rb', line 85

def overlap_in_set(set) 
	overlap_set = Set.new 
	set.each do |e| 
		overlap_set << e if self.overlaps(e)
	end
	overlap_set
end

#overlaps(other) ⇒ Object 



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# File 'lib/bio-faidx/faidx.rb', line 65

def overlaps (other)
	return false if other.entry != @entry
	return true if other.start >= @start and other.start <= @end
	return true if other.end   >= @start and other.end   <= @end
	return false
end

#subset(other) ⇒ Object 



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# File 'lib/bio-faidx/faidx.rb', line 72

def subset (other)
	return false if other.entry != @entry
	return true if other.start >= @start and other.end <= @end
end