Top Level Namespace

Includes:
BioExominer

Defined Under Namespace

Modules: BioExominer, Freq

Constant Summary collapse

USAGE =

BioRuby exominer Plugin BioExominer

Author

Pjotr Prins

Copyright © 2013,2014 Cuppen Group & Pjotr Prins <[email protected]>

"exominer takes a symbol file and parses the piped data for gene symbols"
VERSION_FILENAME = 
File.join(gempath,'VERSION')

Instance Method Summary collapse

Instance Method Details

#valid_symbol(s) ⇒ Object

Returns true or false



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# File 'bin/hugo_exominer_symbols', line 12

def valid_symbol s
  s = s.strip
  return false if s =~ /^\d+$/  # drop all digit id's
  $stderr.print "Symbol contains a space! <"+s+">\n" if s =~ /\s/
  true
end