Module: BELParser::Language::CovalentProteinModification

Defined in:

lib/bel_parser/language/covalent_protein_modification.rb

Overview

CovalentProteinModification defines a controlled vocabulary of post-translational protein modifications.

see en.wikipedia.org/wiki/Post-translational_modification

Constant Summary

Acetylation =

[:Acetylation, :A].freeze

Farnesylation =

[:Farnesylation, :F].freeze

Glycosylation =

[:Glycosylation, :G].freeze

Hydroxylation =

[:Hydroxylation, :H].freeze

Methylation =

[:Methylation, :M].freeze

Phosphorylation =

[:Phosphorylation, :P].freeze

Ribosylation =

[:Ribosylation, :R].freeze

Sumoylation =

[:Sumoylation, :S].freeze

Ubiquitination =

[:Ubiquitination, :U].freeze

Class Method Summary

• .includes?(sym) ⇒ Boolean

  Determines if sym represents a covalent protein modification.

• .names ⇒ Object

  Gets all supported covalent protein modification.

• .values ⇒ Object

  Gets all supported covalent protein modification (i.e. name, 1-Letter).

Class Method Details

.includes?(sym) ⇒ Boolean

Determines if sym represents a covalent protein modification.

covalent protein modifications; false if not supported

Parameters:

• sym (#to_sym) —

  covalent protein modification code

Returns:

• (Boolean) —

  true if sym code is included in supported

# File 'lib/bel_parser/language/covalent_protein_modification.rb', line 23

def self.includes?(sym)
  @hash.key?(sym.to_sym)
end

.names ⇒ Object

Gets all supported covalent protein modification.

# File 'lib/bel_parser/language/covalent_protein_modification.rb', line 28

def self.names
  @names
end

.values ⇒ Object

Gets all supported covalent protein modification (i.e. name, 1-Letter).

# File 'lib/bel_parser/language/covalent_protein_modification.rb', line 33

def self.values
  @values
end