Module: BELParser::Language::Relationship

Included in:
Version1_0::Relationships::ActsIn, Version1_0::Relationships::Analogous, Version1_0::Relationships::Association, Version1_0::Relationships::BiomarkerFor, Version1_0::Relationships::CausesNoChange, Version1_0::Relationships::Decreases, Version1_0::Relationships::DirectlyDecreases, Version1_0::Relationships::DirectlyIncreases, Version1_0::Relationships::HasComponent, Version1_0::Relationships::HasComponents, Version1_0::Relationships::HasMember, Version1_0::Relationships::HasMembers, Version1_0::Relationships::HasModification, Version1_0::Relationships::HasProduct, Version1_0::Relationships::HasVariant, Version1_0::Relationships::Includes, Version1_0::Relationships::Increases, Version1_0::Relationships::IsA, Version1_0::Relationships::NegativeCorrelation, Version1_0::Relationships::Orthologous, Version1_0::Relationships::PositiveCorrelation, Version1_0::Relationships::PrognosticBiomarkerFor, Version1_0::Relationships::RateLimitingStepOf, Version1_0::Relationships::ReactantIn, Version1_0::Relationships::SubProcessOf, Version1_0::Relationships::TranscribedTo, Version1_0::Relationships::TranslatedTo, Version1_0::Relationships::Translocates, Version2_0::Relationships::ActsIn, Version2_0::Relationships::Analogous, Version2_0::Relationships::Association, Version2_0::Relationships::BiomarkerFor, Version2_0::Relationships::CausesNoChange, Version2_0::Relationships::Decreases, Version2_0::Relationships::DirectlyDecreases, Version2_0::Relationships::DirectlyIncreases, Version2_0::Relationships::HasComponent, Version2_0::Relationships::HasComponents, Version2_0::Relationships::HasMember, Version2_0::Relationships::HasMembers, Version2_0::Relationships::HasModification, Version2_0::Relationships::HasProduct, Version2_0::Relationships::HasVariant, Version2_0::Relationships::Includes, Version2_0::Relationships::Increases, Version2_0::Relationships::IsA, Version2_0::Relationships::NegativeCorrelation, Version2_0::Relationships::Orthologous, Version2_0::Relationships::PositiveCorrelation, Version2_0::Relationships::PrognosticBiomarkerFor, Version2_0::Relationships::RateLimitingStepOf, Version2_0::Relationships::ReactantIn, Version2_0::Relationships::Regulates, Version2_0::Relationships::SubProcessOf, Version2_0::Relationships::TranscribedTo, Version2_0::Relationships::TranslatedTo, Version2_0::Relationships::Translocates
Defined in:
lib/bel_parser/language/relationship.rb

Overview

Relationship allows you to describe the type of BEL Relationship.

BEL Relationships represent an interaction between a subject and object in the BEL expression.

Instance Method Summary collapse

Instance Method Details

#==(other) ⇒ Object 



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# File 'lib/bel_parser/language/relationship.rb', line 72

def ==(other)
  return true if equal?(other)
  return false if other.nil?
  short == other || long == other
end

#causal? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 28

def causal?
  false
end

#correlative? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 32

def correlative?
  false
end

#decreasing? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 36

def decreasing?
  false
end

#deprecated? ⇒ Boolean

Indicates whether this relationship is deprecated. Override in your relationship to mark as deprecated.

Returns:

  • (Boolean) —

    false



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# File 'lib/bel_parser/language/relationship.rb', line 24

def deprecated?
  false
end

#description ⇒ Object

Raises:

  • (NotImplementedError) 


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# File 'lib/bel_parser/language/relationship.rb', line 16

def description
  raise NotImplementedError, "#{__method__} is not implemented."
end

#direct? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 40

def direct?
  false
end

#directed? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 44

def directed?
  false
end

#genomic? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 48

def genomic?
  false
end

#increasing? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 52

def increasing?
  false
end

#indirect? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 56

def indirect?
  false
end

#injected? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 60

def injected?
  false
end

#listable? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 64

def listable?
  false
end

#long ⇒ Object

Raises:

  • (NotImplementedError) 


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# File 'lib/bel_parser/language/relationship.rb', line 12

def long
  raise NotImplementedError, "#{__method__} is not implemented."
end

#self? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'lib/bel_parser/language/relationship.rb', line 68

def self?
  false
end

#short ⇒ Object

Raises:

  • (NotImplementedError) 


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# File 'lib/bel_parser/language/relationship.rb', line 8

def short
  raise NotImplementedError, "#{__method__} is not implemented."
end

#to_h(hash = {}) ⇒ Object 



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# File 'lib/bel_parser/language/relationship.rb', line 90

def to_h(hash = {})
  hash.merge!({
    'short'       => short,
    'long'        => long,
    'description' => description
  })
end

#to_s(form = :short) ⇒ Object 



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# File 'lib/bel_parser/language/relationship.rb', line 84

def to_s(form = :short)
  value = _form_value(form)
  return nil unless value
  value.to_s
end

#to_sym(form = :short) ⇒ Object 



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# File 'lib/bel_parser/language/relationship.rb', line 78

def to_sym(form = :short)
  value = _form_value(form)
  return nil unless value
  value.to_s
end