Module: BEL::Annotation

Defined in:

lib/bel/annotation.rb

Defined Under Namespace

Classes: AnnotationDefinition

Constant Summary

LATEST_PREFIX =

'http://resource.belframework.org/belframework/latest-release/'

DEFAULT_URI =

'http://www.openbel.org/bel/namespace/'

ANNOTATION_LATEST =

{
  Anatomy: [
    LATEST_PREFIX + 'annotation/anatomy.belanno',
    'http://www.openbel.org/bel/namespace/uberon/'
  ],
  CellLine: [
    LATEST_PREFIX + 'annotation/cell-line.belanno',
    'http://www.openbel.org/bel/namespace/cell-line-ontology/'
  ],
  CellStructure: [
    LATEST_PREFIX + 'annotation/cell-structure.belanno',
    'http://www.openbel.org/bel/namespace/mesh-cellular-structures/'
  ],
  Cell: [
    LATEST_PREFIX + 'annotation/cell.belanno',
    'http://www.openbel.org/bel/namespace/cell-ontology/'
  ],
  Disease: [
    LATEST_PREFIX + 'annotation/disease.belanno',
    'http://www.openbel.org/bel/namespace/disease-ontology/'
  ],
  MeSHAnatomy: [
    LATEST_PREFIX + 'annotation/mesh-anatomy.belanno',
    'http://www.openbel.org/bel/namespace/mesh-anatomy/'
  ],
  MeSHDisease: [
    LATEST_PREFIX + 'annotation/mesh-diseases.belanno',
    'http://www.openbel.org/bel/namespace/mesh-diseases/'
  ],
  Species: [
    LATEST_PREFIX + 'annotation/species-taxonomy-id.belanno',
    'http://www.openbel.org/bel/namespace/ncbi-taxonomy/'
  ],
}

DEFAULT_ANNOTATIONS =

create classes for each standard keyword

ANNOTATION_LATEST.collect do |keyword, values|
  rdf_uri  = ANNOTATION_LATEST[keyword][1] || DEFAULT_URI
  anno_def = AnnotationDefinition.new(keyword, values[0], rdf_uri)
  Annotation.const_set(keyword, anno_def)
  anno_def
end