Method: BioDSL::Assemble#check_options

Defined in:
lib/BioDSL/seq/assemble.rb

#check_options ⇒ Object

Check option values are sane.

Raises:

  • on bad values.



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# File 'lib/BioDSL/seq/assemble.rb', line 64

def check_options
  if @options[:mismatches_max] < 0
    fail AssembleError, "mismatches_max must be zero or greater - not: \
    #{@options[:mismatches_max]}"
  end

  if @options[:overlap_max] && @options[:overlap_max] <= 0
    fail AssembleError, "overlap_max must be one or greater - not: \
    #{@options[:overlap_max]}"
  end

  if @options[:overlap_min] <= 0
    fail AssembleError, "overlap_min must be one or greater - not: \
    #{@options[:overlap_min]}"
  end
end