Method: BioDSL::Assemble#initialize

Defined in:
lib/BioDSL/seq/assemble.rb

#initialize(entry1, entry2, options) ⇒ Assemble

Method to initialize an Assembly object.



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# File 'lib/BioDSL/seq/assemble.rb', line 48

def initialize(entry1, entry2, options)
  @entry1  = entry1
  @entry2  = entry2
  @overlap = 0
  @offset1 = 0
  @offset2 = 0
  @options = options
  @options[:mismatches_max] ||= 0
  @options[:overlap_min]    ||= 1

  check_options
end