Method List
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R_eval VectorModel
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R_train VectorModel
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#add VectorModel
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adjust_hash! FDR
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adjust_native FDR
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combine RandomWalk
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#cross_validation VectorModel
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dijkstra Paths
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#directory VectorModel
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draw BarPlot
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draw_hits OrderedList
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#draw_hits OrderedList
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draw_hits RandomWalk
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draw_hits_on_canvas BarPlot
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draw_sections_on_canvas BarPlot
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#enrichment TSV
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#enrichment Entity::Enriched
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#enrichment_for TSV
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#eval VectorModel
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#eval_list VectorModel
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#eval_model VectorModel
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#extract_features VectorModel
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extract_path Paths
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#features VectorModel
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get_canvas BarPlot
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get_color BarPlot
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gradient_color BarPlot
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heatmap Heatmap
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heatmap2 Heatmap
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hits OrderedList
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#hits OrderedList
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hypergeometric Hypergeometric
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#initialize VectorModel
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#initialize SVMModel
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#labels VectorModel
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#model_file VectorModel
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#path_to Entity::Adjacent
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permutations RandomWalk
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permutations RankProduct
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permutations_full RankProduct
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permutations_up_down RandomWalk
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pvalue RandomWalk
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#pvalue OrderedList
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#pvalue_weights OrderedList
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#random_paths_to Entity::Adjacent
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random_weighted_dijkstra Paths
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#rank_enrichment TSV
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rank_enrichment TSV
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#rank_product TSV
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score RankProduct
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#score OrderedList
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score_up_down RandomWalk
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#score_weights OrderedList
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setup OrderedList
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step_up_native FDR
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#total_weights OrderedList
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#train VectorModel
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#train_model VectorModel
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weighted_dijkstra Paths
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#weights OrderedList