Class: ActionShortInsert
- Inherits:
-
SeqtrimAction
- Object
- SeqtrimAction
- ActionShortInsert
- Defined in:
- lib/seqtrimnext/actions/action_short_insert.rb
Overview
Author: Almudena Bocinos Rioboo
Defines the main methods that are necessary to execute ActionShortInserted
Inherit: Plugin
Instance Attribute Summary
Attributes inherited from SeqtrimAction
#cut, #end_pos, #found_definition, #informative, #left_action, #message, #reversed, #right_action, #start_pos, #tag_id
Instance Method Summary collapse
-
#apply_decoration(char) ⇒ Object
def apply_to(seq) # seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos) $LOG.debug “ Applying #selfself.class.
-
#initialize(start_pos, end_pos) ⇒ ActionShortInsert
constructor
A new instance of ActionShortInsert.
Methods inherited from SeqtrimAction
#action_type, #apply_to, #contains?, #contains_action?, #decorate, #description, #inspect, #left_action?, #near_left?, #right_action?, #title, #to_hash, #to_human, #type
Constructor Details
#initialize(start_pos, end_pos) ⇒ ActionShortInsert
Returns a new instance of ActionShortInsert.
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# File 'lib/seqtrimnext/actions/action_short_insert.rb', line 12 def initialize(start_pos,end_pos) super(start_pos,end_pos) # @cut =true @cut = false @informative = true end |
Instance Method Details
#apply_decoration(char) ⇒ Object
def apply_to(seq)
# seq.seq_fasta = seq.seq_fasta.slice(start_pos,end_pos)
$LOG.debug " Applying #{self.class}. ------ Error.Sequence is not good ------ . BEGIN: #{@start_pos} END: #{@end_pos} "
end
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# File 'lib/seqtrimnext/actions/action_short_insert.rb', line 27 def apply_decoration(char) return char.on_red end |