Class: OpenBEL::Routes::Datasets
- Defined in:
- app/openbel/api/routes/datasets.rb
Constant Summary collapse
- DEFAULT_TYPE =
'application/hal+json'
- ACCEPTED_TYPES =
{ :bel => 'application/bel', :xml => 'application/xml', :xbel => 'application/xml', :json => 'application/json', }
- MONGO_BATCH =
500
- FACET_THRESHOLD =
10000
- DC =
::RDF::Vocab::DC
- VOID =
::RDF::Vocab::VOID
- FOAF =
::RDF::Vocab::FOAF
Constants included from Helpers
Helpers::DEFAULT_CONTENT_TYPE, Helpers::DEFAULT_CONTENT_TYPE_ID
Constants included from Nanopub::FacetFilter
Nanopub::FacetFilter::EMPTY, Nanopub::FacetFilter::NANOPUB_PARTS
Constants inherited from Base
Base::DEFAULT_CONTENT_TYPE, Base::DEFAULT_CONTENT_TYPE_ID, Base::RESOURCE_SERIALIZERS, Base::SCHEMA_BASE_URL, Base::SPOKEN_CONTENT_TYPES
Constants included from Schemas
Schemas::COMPILED_SCHEMAS, Schemas::SCHEMA_DIR, Schemas::SUFFIX
Constants included from OpenBEL::Resource::Namespaces
OpenBEL::Resource::Namespaces::VOCABULARY_RDF
Constants included from OpenBEL::Resource::Annotations
OpenBEL::Resource::Annotations::VOCABULARY_RDF
Instance Method Summary collapse
-
#initialize(app) ⇒ Datasets
constructor
A new instance of Datasets.
Methods included from Helpers
#incomplete_filters, #invalid_fts_filters, #parse_filters, #render_nanopub_collection, #validate_experiment_context, #validate_filters!, #validate_nanopub!, #validate_statement, #wants_default?
Methods included from Nanopub::FacetFilter
#make_filter, #map_citation_facets, #map_experiment_context_facets, #map_metadata_facets, #map_nanopub_facets
Methods included from Schemas
Constructor Details
#initialize(app) ⇒ Datasets
Returns a new instance of Datasets.
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# File 'app/openbel/api/routes/datasets.rb', line 38 def initialize(app) super BEL.translator(:rdf) @bel_version = OpenBEL::Settings[:bel][:version] # nanopub API using Mongo. mongo = OpenBEL::Settings[:nanopub_store][:mongo] @api = OpenBEL::Nanopub::Nanopub.new(mongo) # RdfRepository using Jena. @rr = BEL::RdfRepository.plugins[:jena].create_repository( :tdb_directory => OpenBEL::Settings[:resource_rdf][:jena][:tdb_directory] ) # Annotations using RdfRepository annotations = BEL::Resource::Annotations.new(@rr) @annotation_transform = AnnotationTransform.new(annotations) end |