Documentation for mspire (0.4.4)

Alphabetic Index

File Listing

README

Namespace Listing A-Z

A

AA (Validator)
AAEst (Validator)
AAFreqs (SpecID)
AAModification (Sequest::PepXML)
AXML (TopPred::Parser_XML)
AXML (MS::Parser::MzXML)
AXML (MS::Parser::MzData)
Align
Archive
Array

B

Background (Validator)
Bias (Validator)
Bioworks
Bsearch

C

CHAMS (Align)
Calculator (Mass)
CmdlineParser (SpecID::Precision::Prob)
CmdlineParser (SpecID::Precision::Filter)
Converter (MS)

D

DOM (TopPred::Parser_XML)
DOM (MS::Parser::MzData)
DOM (MS::Parser::MzXML)
Decoy (Validator)
DecoyROC
DigestionBased (Validator)
Digestor

E

Enumerable

F

G

H

HTML (ProteinSummary)
Hash
Header (SQT)
Hpricot (MS::Parser::MzXML)

I

Index (TopPred)
Index (Phobius)
Interactive (SpecID::Precision::Filter)

L

LazyData (MS::Parser::MzData::AXML)
LazyData (AXML)
LazyData (AXML::XMLParser)
LazyIO (MS::Spectrum)
LazyPeaks (AXML)
LazyPeaks (MS::Parser::MzXML::AXML)
LazyPeaks (AXML::XMLParser)
LazyString (MS::Spectrum)
LibXML (MS::Parser::MzXML)
LibXML (TopPred::Parser_XML)
LibXML (MS::Parser::MzData)
Locus (SQT)

M

MS
MSMSPipelineAnalysis (Sequest::PepXML)
MSMSRunSummary (Sequest::PepXML)
MSRun (MS)
MSRunIndex (MS)
Mass
Match (SQT)
Minitar (Archive::Tar)
ModificationInfo (Sequest::PepXML::SearchHit)
Modifications (Sequest::PepXML)
MsRun (MS::Parser::MzXML::Regexp)
MsRunHeader (MS::Parser::MzXML::XMLParser)
Mspire
MzData (MS::Parser)
MzXML (MS::Parser)
MzXML (MS::Converter)

N

Numeric

O

Output (SpecID::Precision)
Output (SpecID::Precision::Filter)
Output (SpecID::Precision::Prob)

P

Q

QValue (Validator)

R

REXML (MS::Parser::MzXML)
REXMLStreamListener (MS::Parser::MzXML)
REXMLStreamListenerHelper
ROC
Regexp (MS::Parser::MzXML)

S

SQT
SQTGroup
SampleEnzyme
Scan (MS)
SearchDatabase (Sequest::PepXML)
SearchHit (Sequest::PepXML)
SearchResult (Sequest::PepXML)
SearchSummary (Sequest::PepXML)
Sequest
SpecID
SpecIDXML
Spectrum (MS::Parser::MzXML::XMLParser)
Spectrum (SQT)
Spectrum (MS)
SpectrumQuery (Sequest::PepXML)
String

T

Targz (Archive)
TerminalModification (Sequest::PepXML)
TimePoint (GradientProgram)
TopPred
Transmem (Validator)
TransmemIndex
TruePos (Validator)

V

X

XML (Bioworks)
XML
XMLParser (MS::Parser::MzXML)
XMLParser (Bioworks)
XMLParserWrapper
XMLStyleParser