Class List
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- AXML::LazyData < AXMLAXML
- AXML::LazyPeaks < AXMLAXML
- AXML::XMLParser::LazyData < XMLParserAXML::XMLParser
- AXML::XMLParser::LazyPeaks < XMLParserAXML::XMLParser
- AlignTop Level Namespace
- CHAMS < ObjectAlign
- ArchiveTop Level Namespace
- TargzArchive
- Archive::Tar::MinitarArchive::Tar
- Array < ObjectTop Level Namespace
- Bioworks < ObjectTop Level Namespace
- BsearchTop Level Namespace
- DecoyROC < ROCTop Level Namespace
- Digestor < ObjectTop Level Namespace
- EnumerableTop Level Namespace
- Fasta < ArrayTop Level Namespace
- Prot < ObjectFasta
- FastaManipulationTop Level Namespace
- FastaShaker < ObjectTop Level Namespace
- Filter < ObjectTop Level Namespace
- Float < ObjectTop Level Namespace
- GI < ObjectTop Level Namespace
- GIListener < ObjectTop Level Namespace
- GenericSpecID < ObjectTop Level Namespace
- GradientProgram < ObjectTop Level Namespace
- TimePoint < ObjectGradientProgram
- Hash < ObjectTop Level Namespace
- MSTop Level Namespace
- MzXMLMS::Converter
- MSRun < ObjectMS
- MSRunIndex < ObjectMS
- ParserMS
- MzDataMS::Parser
- MzXMLMS::Parser
- AXML < DOMMS::Parser::MzXML
- LazyPeaks < AXMLMS::Parser::MzXML::AXML
- DOM < ObjectMS::Parser::MzXML
- Hpricot < ObjectMS::Parser::MzXML
- LibXML < DOMMS::Parser::MzXML
- REXML < ObjectMS::Parser::MzXML
- PrecMzByNum < ObjectMS::Parser::MzXML::REXML
- REXMLStreamListenerMS::Parser::MzXML
- PrecMzByNum < ObjectMS::Parser::MzXML::REXMLStreamListener
- Regexp < ObjectMS::Parser::MzXML
- MsRun < ObjectMS::Parser::MzXML::Regexp
- XMLParser < ObjectMS::Parser::MzXML
- MsRunHeader < XMLParserMS::Parser::MzXML::XMLParser
- PrecMzByNum < XMLParserMS::Parser::MzXML::XMLParser
- Spectrum < XMLParserMS::Parser::MzXML::XMLParser
- Precursor < ObjectMS
- Scan < ObjectMS
- Spectrum < ObjectMS
- LazyIOMS::Spectrum
- LazyString < SpectrumMS::Spectrum
- Mass < ObjectTop Level Namespace
- Calculator < ObjectMass
- MspireTop Level Namespace
- Numeric < ObjectTop Level Namespace
- Phobius < ObjectTop Level Namespace
- Index < HashPhobius
- ParserPhobius
- ParserShort < ObjectPhobius
- PiZeroTop Level Namespace
- ProphTop Level Namespace
- PepSummary < ObjectProph
- Prot < ObjectProph
- Pep < ObjectProph::Prot
- ProtGroup < ObjectProph
- ProtSummary < ObjectProph
- Parser < ObjectProph::ProtSummary
- ProteinReferenceableTop Level Namespace
- ProteinSummary < ObjectTop Level Namespace
- HTMLProteinSummary
- REXMLStreamListenerHelperTop Level Namespace
- ROC < ObjectTop Level Namespace
- SQT < ObjectTop Level Namespace
- Header < HashSQT
- Locus < ObjectSQT
- Match < ObjectSQT
- Percolator < MatchSQT::Match
- Spectrum < ObjectSQT
- SQTGroup < ObjectTop Level Namespace
- SampleEnzyme < ObjectTop Level Namespace
- SequestTop Level Namespace
- Params < ObjectSequest
- PepXML < ObjectSequest
- AAModification < ObjectSequest::PepXML
- MSMSPipelineAnalysis < ObjectSequest::PepXML
- MSMSRunSummary < ObjectSequest::PepXML
- Modifications < ObjectSequest::PepXML
- Parameters < ObjectSequest::PepXML
- SearchDatabase < ObjectSequest::PepXML
- SearchHit < ObjectSequest::PepXML
- ModificationInfo < ObjectSequest::PepXML::SearchHit
- SearchResult < ObjectSequest::PepXML
- SearchSummary < ObjectSequest::PepXML
- SpectrumQuery < ObjectSequest::PepXML
- TerminalModification < ObjectSequest::PepXML
- SpecIDTop Level Namespace
- AAFreqs < ObjectSpecID
- GenericPep < ObjectSpecID
- GenericProt < ObjectSpecID
- ParserSpecID
- PepSpecID
- PrecisionSpecID
- Filter < ObjectSpecID::Precision
- CmdlineParser < ObjectSpecID::Precision::Filter
- Interactive < ObjectSpecID::Precision::Filter
- Output < ObjectSpecID::Precision::Filter
- Peps < FilterSpecID::Precision::Filter
- OutputSpecID::Precision
- Prob < ObjectSpecID::Precision
- CmdlineParser < ObjectSpecID::Precision::Prob
- Output < ObjectSpecID::Precision::Prob
- ProtSpecID
- SpecIDXMLTop Level Namespace
- String < ObjectTop Level Namespace
- TopPred < ObjectTop Level Namespace
- Index < HashTopPred
- ParserTopPred
- Parser_Text < ObjectTopPred
- Parser_XMLTopPred
- TransmemIndexTop Level Namespace
- Validator < ObjectTop Level Namespace
- AA < DigestionBasedValidator
- AAEst < AAValidator
- Background < ObjectValidator
- Bias < DigestionBasedValidator
- Decoy < ValidatorValidator
- DigestionBased < ValidatorValidator
- Probability < ObjectValidator
- ProtFromPep < ValidatorValidator
- QValue < ObjectValidator
- TransmemValidator
- Protein < DigestionBasedValidator::Transmem
- TruePos < ValidatorValidator
- VecD < ObjectTop Level Namespace
- XMLTop Level Namespace
- XMLParserWrapperTop Level Namespace
- XMLStyleParserTop Level Namespace