Class: Mspire::Mzml::ScanList

Inherits:
Array
  • Object
show all
Includes:
Paramable
Defined in:
lib/mspire/mzml/scan_list.rb

Overview

MUST supply a child term of MS:1000570 (spectra combination) only once

e.g.: MS:1000571 (sum of spectra)
e.g.: MS:1000573 (median of spectra)
e.g.: MS:1000575 (mean of spectra)
e.g.: MS:1000795 (no combination)

Instance Attribute Summary

Attributes included from Paramable

#cv_params, #ref_param_groups, #user_params

Class Method Summary collapse

Instance Method Summary collapse

Methods included from Paramable

#accessionable_params, #describe!, #describe_from_xml!, #describe_many!, #describe_self_from_xml!, #each_accessionable_param, #each_param, #fetch, #fetch_by_accession, #param?, #param_by_accession, #params, #params?, #reject!, #replace!, #replace_many!

Methods inherited from Array

#in_groups

Constructor Details

#initialize {|_self| ... } ⇒ ScanList

Returns a new instance of ScanList.

Yields:

  • (_self)

Yield Parameters:



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# File 'lib/mspire/mzml/scan_list.rb', line 16

def initialize
  params_init
  yield(self) if block_given?
end

Class Method Details

.from_xml(xml, link) ⇒ Object 



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# File 'lib/mspire/mzml/scan_list.rb', line 31

def self.from_xml(xml, link)
  scan_list = self.new
  scan_n = scan_list.describe_from_xml!(xml, link[:ref_hash])
  if scan_n
    loop do
      scan_list << Mspire::Mzml::Scan.from_xml(scan_n, link)
      break unless scan_n = scan_n.next
    end
  end
  scan_list
end

Instance Method Details

#to_xml(builder, default_ids) ⇒ Object Also known as: list_xml 



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# File 'lib/mspire/mzml/scan_list.rb', line 21

def to_xml(builder, default_ids)
  builder.scanList(count: self.size) do |sl_n|
    super(sl_n)
    self.each do |scan|
      scan.to_xml(sl_n, default_ids)
    end
  end
  builder
end