Class: Mspire::Sequest::Sqt::Match

Inherits:
Object
  • Object
show all
Defined in:
lib/mspire/sequest/sqt.rb

Overview

rxcorr = rank by xcorr rsp = rank by sp NOTE: deltacn_orig deltacn is the adjusted deltacn (like Bioworks - shift all scores up and give the last one 1.1)

Direct Known Subclasses

Percolator

Defined Under Namespace

Classes: Percolator

Constant Summary collapse

Leader = 
'M'

Instance Method Summary collapse

Instance Method Details

#from_line(line) ⇒ Object 



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# File 'lib/mspire/sequest/sqt.rb', line 326

def from_line(line)
  line.chomp!
  ar = line.split(Mspire::Sequest::Sqt::Delimiter)
  self[0] = ar[1].to_i
  self[1] = ar[2].to_i
  self[2] = ar[3].to_f
  self[3] = ar[4].to_f
  self[4] = ar[5].to_f
  self[5] = ar[6].to_f
  self[6] = ar[7].to_i
  self[7] = ar[8].to_i
  self[8] = ar[9]
  self[9] = ar[10]
  self[14] = Mspire::Ident::Peptide.sequence_to_aaseq(self[8])
  self
end

#proteins ⇒ Object

same as ‘loci’



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# File 'lib/mspire/sequest/sqt.rb', line 322

def proteins
  self[16]
end