Class: Mspire::Sequest::Sqt::Locus

Inherits:

Object

• Object
• Mspire::Sequest::Sqt::Locus

Defined in:

lib/mspire/sequest/sqt.rb

Constant Summary

Leader =

'L'

Class Method Summary

• .from_line(line) ⇒ Object

  returns a new Locus object.

Instance Method Summary

• #first_entry ⇒ Object
• #id ⇒ Object
• #initialize(locus = nil, description = nil, peptides = []) ⇒ Locus constructor

  A new instance of Locus.

• #reference ⇒ Object

Constructor Details

#initialize(locus = nil, description = nil, peptides = []) ⇒ Locus

Returns a new instance of Locus.

# File 'lib/mspire/sequest/sqt.rb', line 383

def initialize(locus=nil, description=nil, peptides=[])
  super(locus, description)
end

Class Method Details

.from_line(line) ⇒ Object

returns a new Locus object

# File 'lib/mspire/sequest/sqt.rb', line 388

def self.from_line(line)
  line.chomp!
  self.new( *line.split(Mspire::Sequest::Sqt::Delimiter) )  # fills in the first two values 
end

Instance Method Details

#first_entry ⇒ Object

# File 'lib/mspire/sequest/sqt.rb', line 379

def first_entry ; self[0] end

#id ⇒ Object

# File 'lib/mspire/sequest/sqt.rb', line 381

def id ; self[0] end

#reference ⇒ Object

# File 'lib/mspire/sequest/sqt.rb', line 380

def reference ; self[0] end