Class: MiGA::Cli::Action::Files

Inherits:
MiGA::Cli::Action show all
Defined in:
lib/miga/cli/action/files.rb

Constant Summary

Constants included from MiGA

MiGA::CITATION, VERSION, VERSION_DATE, VERSION_NAME

Instance Attribute Summary

Attributes inherited from MiGA::Cli::Action

#cli

Instance Method Summary collapse

Methods inherited from MiGA::Cli::Action

#complete, #empty_action, #initialize, #launch, load, #name

Methods inherited from MiGA

CITATION, DEBUG, DEBUG_OFF, DEBUG_ON, DEBUG_TRACE_OFF, DEBUG_TRACE_ON, FULL_VERSION, LONG_VERSION, VERSION, VERSION_DATE, initialized?, #result_files_exist?

Methods included from MiGA::Common::Path

#root_path, #script_path

Methods included from MiGA::Common::Format

#clean_fasta_file, #seqs_length, #tabulate

Constructor Details

This class inherits a constructor from MiGA::Cli::Action

Instance Method Details

#parse_cli ⇒ Object 



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# File 'lib/miga/cli/action/files.rb', line 8

def parse_cli
  cli.defaults = {details: false, json: true}
  cli.parse do |opt|
    cli.opt_object(opt, [:project, :dataset_opt])
    opt.on(
      '-i', '--info',
      'Print additional details for each file'
      ){ |v| cli[:details] = v }
    opt.on('--[no-]json',
      'Include (or not) JSON files containing results metadata',
      'JSON files are included by default'
      ){ |v| cli[:json] = v }
  end
end

#perform ⇒ Object 



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# File 'lib/miga/cli/action/files.rb', line 23

def perform
  cli.load_project_or_dataset.each_result do |sym, res|
    cli.puts "#{ "#{sym}\tjson\t" if cli[:details] }#{res.path}" if cli[:json]
    res.each_file do |k,f|
      cli.puts "#{ "#{sym}\t#{k}\t" if cli[:details] }#{res.dir}/#{f}"
    end
  end
end