Class: Ucsc::Hg18::GenomicSuperDup
- Inherits:
-
DBConnection
- Object
- ActiveRecord::Base
- DBConnection
- Ucsc::Hg18::GenomicSuperDup
- Includes:
- Feature
- Defined in:
- lib/ucsc/hg18/activerecord.rb
Overview
DESCRIPTION
From Structural Variants description page when clicking the “Describe table schema” in the table browser: “This track shows regions detected as putative genomic duplications within the golden path. The following display conventions are used to distinguish levels of similarity:
* Light to dark gray: 90 - 98% similarity
* Light to dark yellow: 98 - 99% similarity
* Light to dark orange: greater than 99% similarity
* Red: duplications of greater than 98% similarity that lack sufficient
Segmental Duplication Database evidence (most likely missed overlaps)
For a region to be included in the track, at least 1 Kb of the total sequence (containing at least 500 bp of non-RepeatMasked sequence) had to align and a sequence identity of at least 90% was required.“