Class: Ucsc::Hg18::CnpSebat
- Inherits:
-
DBConnection
- Object
- ActiveRecord::Base
- DBConnection
- Ucsc::Hg18::CnpSebat
- Includes:
- Feature
- Defined in:
- lib/ucsc/hg18/activerecord.rb
Overview
DESCRIPTION
From Structural Variants description page when clicking the “Describe table schema” in the table browser: “Following digestion with BglII or HindIII, genomic DNA was hybridized to a custom array consisting of 85,000 oligonucleotide probes. The probes were selected to be free of common repeats and have unique homology within the human genome. The average resolution of the array was ~35kb; however, only intervals in which three consecutive probes showed concordant signals were scored as CNPs. All hybridizations were performed in duplicate incorporating a dye-reversal, with the false positive rate estimated to be ~6%.”