Module: Gbif::Registry

Defined in:
lib/gbifrb/Registry.rb,
lib/gbifrb/get_data.rb

Class Method Summary collapse

Class Method Details

.dataset_metrics(uuid:, verbose: nil, options: nil) ⇒ Object

Get details on a GBIF dataset.

References: www.gbif.org/developer/registry#datasetMetrics

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.dataset_metrics(uuid: '3f8a1297-3259-4700-91fc-acc4170b27ce')
registry.dataset_metrics(uuid: '66dd0960-2d7d-46ee-a491-87b9adcfe7b1')
# registry.dataset_metrics(uuid: ['3f8a1297-3259-4700-91fc-acc4170b27ce', '66dd0960-2d7d-46ee-a491-87b9adcfe7b1'])

Parameters:

  • uuid (String) —

    One or more dataset UUIDs. See examples.

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details



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# File 'lib/gbifrb/Registry.rb', line 259

def self.dataset_metrics(uuid:, verbose: nil, options: nil)
    if len2(uuid) == 1
        return self.getdata_dataset_metrics(uuid, verbose, options)
    else
        raise "not ready yet"
        # return [self.getdata_dataset_metrics(x, verbose, options) for x in uuid]
    end
end

.dataset_search(q: nil, type: nil, keyword: nil, owningOrg: nil, publishingOrg: nil, hostingOrg: nil, decade: nil, publishingCountry: nil, facet: nil, facetMincount: nil, facetMultiselect: nil, hl: false, limit: 100, offset: nil, verbose: nil, options: nil) ⇒ Hash

Note:

Note that you can pass in additional faceting parameters on a per field basis. For example, if you want to limit the numbef of facets returned from a field ‘foo’ to 3 results, pass in ‘foo_facetLimit = 3’. GBIF does not allow all per field parameters, but does allow some. See also examples.

Full text search across all datasets. Results are ordered by relevance.

References: www.gbif.org/developer/registry#datasetSearch

Examples:


require 'gbifrb'

registry = Gbif::Registry

# Gets all datasets of type "OCCURRENCE".
registry.dataset_search(type: "OCCURRENCE", limit:  10)

# Fulltext search for all datasets having the word "amsterdam" somewhere in
# its metadata (title, description, etc).
registry.dataset_search(q: "amsterdam", limit:  10)

# Limited search
registry.dataset_search(type: "OCCURRENCE", limit: 2)
registry.dataset_search(type: "OCCURRENCE", limit: 2, offset: 10)

# Search by decade
registry.dataset_search(decade: 1980, limit:  10)

# Faceting
## just facets
registry.dataset_search(facet: "decade", facetMincount: 10, limit: 0)

## data and facets
registry.dataset_search(facet: "decade", facetMincount: 10, limit: 2)

## many facet variables
registry.dataset_search(facet: ["decade", "type"], facetMincount: 10, limit: 0)

## facet vars
### per variable paging
registry.dataset_search(
    facet: ["decade", "type"],
    decade_facetLimit: 3,
    type_facetLimit: 3,
    limit: 0
)

## highlight
registry.dataset_search(q: "plant", hl: True, limit :  10)

Parameters:

  • q (String) (defaults to: nil) —

    Query term(s) for full text search. The value for this parameter can be a simple word or a phrase. Wildcards can be added to the simple word parameters only, e.g. ‘q=puma’

  • type (String) (defaults to: nil) —

    Type of dataset, options include OCCURRENCE, etc.

  • keyword (String) (defaults to: nil) —

    Keyword to search by. Datasets can be tagged by keywords, which you can search on. The search is done on the merged collection of tags, the dataset keywordCollections and temporalCoverages. SEEMS TO NOT BE WORKING ANYMORE AS OF 2016-09-02.

  • owningOrg (String) (defaults to: nil) —

    Owning organization. A uuid string. See :func:‘~pygbif.registry.organizations`

  • publishingOrg (String) (defaults to: nil) —

    Publishing organization. A uuid string. See :func:‘~pygbif.registry.organizations`

  • hostingOrg (String) (defaults to: nil) —

    Hosting organization. A uuid string. See :func:‘~pygbif.registry.organizations`

  • publishingCountry (String) (defaults to: nil) —

    Publishing country.

  • decade (String) (defaults to: nil) —

    Decade, e.g., 1980. Filters datasets by their temporal coverage broken down to decades. Decades are given as a full year, e.g. 1880, 1960, 2000, etc, and will return datasets wholly contained in the decade as well as those that cover the entire decade or more. Facet by decade to get the break down, e.g. ‘/search?facet=DECADE&facet_only=true’ (see example below)

  • facet (String) (defaults to: nil) —

    A list of facet names used to retrieve the 100 most frequent values for a field. Allowed facets are: type, keyword, publishingOrg, hostingOrg, decade, and publishingCountry. Additionally subtype and country are legal values but not yet implemented, so data will not yet be returned for them.

  • facetMincount (String) (defaults to: nil) —

    Used in combination with the facet parameter. Set facetMincount=# to exclude facets with a count less than #, e.g. api.gbif.org/v1/dataset/search?facet=type&limit=0&facetMincount=10000 only shows the type value ‘OCCURRENCE’ because ‘CHECKLIST’ and ‘METADATA’ have counts less than 10000.

  • facetMultiselect (bool) (defaults to: nil) —

    Used in combination with the facet parameter. Set facetMultiselect=True to still return counts for values that are not currently filtered, e.g. api.gbif.org/v1/dataset/search?facet=type&limit=0&type=CHECKLIST&facetMultiselect=true still shows type values ‘OCCURRENCE’ and ‘METADATA’ even though type is being filtered by type=CHECKLIST

  • hl (bool) (defaults to: false) —

    Set ‘hl=True’ to highlight terms matching the query when in fulltext search fields. The highlight will be an emphasis tag of class ‘gbifH1’ e.g. api.gbif.org/v1/dataset/search?q=plant&hl=true Fulltext search fields include: title, keyword, country, publishing country, publishing organization title, hosting organization title, and description. One additional full text field is searched which includes information from metadata documents, but the text of this field is not returned in the response.

  • limit (int) (defaults to: 100) —

    Number of results to return. Default: ‘300’

  • offset (int) (defaults to: nil) —

    Record to start at. Default: ‘0’

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details

Returns:



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# File 'lib/gbifrb/Registry.rb', line 468

def self.dataset_search(q: nil, type: nil, keyword: nil,
    owningOrg: nil, publishingOrg: nil, hostingOrg: nil, decade: nil,
    publishingCountry: nil, facet: nil, facetMincount: nil,
    facetMultiselect: nil, hl: false, limit: 100, offset: nil,
    verbose: nil, options: nil)

    arguments = {q: q, type: type, keyword: keyword,
                owningOrg: owningOrg, publishingOrg: publishingOrg,
                hostingOrg: hostingOrg, decade: decade,
                publishingCountry: publishingCountry, facet: facet,
                facetMincount: facetMincount, facetMultiselect: facetMultiselect,
                hl: hl, limit: limit, offset: offset}.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }
    Request.new('dataset/search', opts, verbose, options).perform
end

.dataset_suggest(q: nil, type: nil, keyword: nil, owningOrg: nil, publishingOrg: nil, hostingOrg: nil, publishingCountry: nil, decade: nil, limit: 100, offset: nil, verbose: nil, options: nil) ⇒ Hash

Search that returns up to 20 matching datasets. Results are ordered by relevance.

References: www.gbif.org/developer/registry#datasetSearch

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.dataset_suggest(q: "Amazon", type: "OCCURRENCE")

# Suggest datasets tagged with keyword "france".
registry.dataset_suggest(keyword: "france")

# Suggest datasets owned by the organization with key
# "07f617d0-c688-11d8-bf62-b8a03c50a862" (UK NBN).
registry.dataset_suggest(owningOrg: "07f617d0-c688-11d8-bf62-b8a03c50a862")

# Fulltext search for all datasets having the word "amsterdam" somewhere in
# its metadata (title, description, etc).
registry.dataset_suggest(q: "amsterdam")

# Limited search
registry.dataset_suggest(type: "OCCURRENCE", limit: 2)
registry.dataset_suggest(type: "OCCURRENCE", limit: 2, offset: 10)

# Return just descriptions
registry.dataset_suggest(type: "OCCURRENCE", limit:  5, description: True)

# Search by decade
registry.dataset_suggest(decade: 1980, limit:  30)

Parameters:

  • q (String) (defaults to: nil) —

    Query term(s) for full text search. The value for this parameter can be a simple word or a phrase. Wildcards can be added to the simple word parameters only, e.g. ‘q=puma’

  • type (String) (defaults to: nil) —

    Type of dataset, options include OCCURRENCE, etc.

  • keyword (String) (defaults to: nil) —

    Keyword to search by. Datasets can be tagged by keywords, which you can search on. The search is done on the merged collection of tags, the dataset keywordCollections and temporalCoverages. SEEMS TO NOT BE WORKING ANYMORE AS OF 2016-09-02.

  • owningOrg (String) (defaults to: nil) —

    Owning organization. A uuid string. See :func:‘~pygbif.registry.organizations`

  • publishingOrg (String) (defaults to: nil) —

    Publishing organization. A uuid string. See :func:‘~pygbif.registry.organizations`

  • hostingOrg (String) (defaults to: nil) —

    Hosting organization. A uuid string. See :func:‘~pygbif.registry.organizations`

  • publishingCountry (String) (defaults to: nil) —

    Publishing country.

  • decade (String) (defaults to: nil) —

    Decade, e.g., 1980. Filters datasets by their temporal coverage broken down to decades. Decades are given as a full year, e.g. 1880, 1960, 2000, etc, and will return datasets wholly contained in the decade as well as those that cover the entire decade or more. Facet by decade to get the break down, e.g. ‘/search?facet=DECADE&facet_only=true’ (see example below)

  • limit (int) (defaults to: 100) —

    Number of results to return. Default: ‘300’

  • offset (int) (defaults to: nil) —

    Record to start at. Default: ‘0’

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details

Returns:



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# File 'lib/gbifrb/Registry.rb', line 359

def self.dataset_suggest(q: nil, type: nil, keyword: nil, owningOrg: nil,
    publishingOrg: nil, hostingOrg: nil, publishingCountry: nil, decade: nil,
    limit: 100, offset: nil, verbose: nil, options: nil)

    arguments = { q: q,  type: type,  keyword: keyword,
         publishingOrg: publishingOrg,  hostingOrg: hostingOrg,
         owningOrg: owningOrg,  decade: decade,
         publishingCountry: publishingCountry,
         limit: limit,  offset: offset}.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }
    Request.new('dataset/suggest', opts, verbose, options).perform
end

.datasets(data: 'all', type: nil, uuid: nil, query: nil, id: nil, limit: 100, offset: nil, verbose: nil, options: nil) ⇒ Object

Search for datasets and dataset metadata.

References www.gbif.org/developer/registry#datasets

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.datasets(limit: 5)
registry.datasets(type: "OCCURRENCE")
registry.datasets(uuid: "a6998220-7e3a-485d-9cd6-73076bd85657")
registry.datasets(data: 'contact', uuid: "a6998220-7e3a-485d-9cd6-73076bd85657")
registry.datasets(data: 'metadata', uuid: "a6998220-7e3a-485d-9cd6-73076bd85657")
registry.datasets(data: 'metadata', uuid: "a6998220-7e3a-485d-9cd6-73076bd85657", id: 598)
# registry.datasets(data: ['deleted','duplicate'])
# registry.datasets(data: ['deleted','duplicate'], limit=1)

Parameters:

  • data (String) (defaults to: 'all') —

    The type of data to get. Default: ‘all’

  • type (String) (defaults to: nil) —

    Type of dataset, options include ‘OCCURRENCE’, etc.

  • uuid (String) (defaults to: nil) —

    UUID of the data node provider. This must be specified if data is anything other than ‘all’.

  • query (String) (defaults to: nil) —

    Query term(s). Only used when ‘data = ’all”

  • id (int) (defaults to: nil) —

    A metadata document id.

  • offset (Fixnum) (defaults to: nil) —

    Number of record to start at, any non-negative integer. Default: 0

  • limit (Fixnum) (defaults to: 100) —

    Number of results to return. Default: 100

  • verbose (Boolean) (defaults to: nil) —

    Print request headers to stdout. Default: false

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details



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# File 'lib/gbifrb/Registry.rb', line 295

def self.datasets(data: 'all', type: nil, uuid: nil, query: nil, id: nil,
    limit: 100, offset: nil, verbose: nil, options: nil)

    arguments = { q: query, type: type, limit: limit, offset: offset}.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }
    data_choices = ['all', 'organization', 'contact', 'endpoint',
        'identifier', 'tag', 'machinetag', 'comment',
        'constituents', 'document', 'metadata', 'deleted',
        'duplicate', 'subDataset', 'withNoEndpoint']
    check_data(data, data_choices)
    if len2(data) == 1
        return self.datasets_fetch(data, uuid, opts, verbose, options)
    else
        raise "not ready yet"
        # return [self.datasets_fetch(x, uuid, args, **kwargs) for x in data]
    end
end

.datasets_fetch(x, uuid, opts, verbose, options) ⇒ Object

:nodoc:



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# File 'lib/gbifrb/get_data.rb', line 103

def self.datasets_fetch(x, uuid, opts, verbose, options) # :nodoc:
    if !['all','deleted','duplicate','subDataset','withNoEndpoint'].include? x and uuid.nil?
        stop('You must specify a uuid if data does not equal all and data does not equal of deleted, duplicate, subDataset, or withNoEndpoint')
    end

    if uuid.nil?
        if x == 'all'
            url = 'dataset'
        else
            if !id.nil? and x == 'metadata'
                url = 'dataset/metadata/' + id + '/document'
            else
                url = 'dataset/' + x
            end
        end
    else
        if x == 'all'
            url = 'dataset/' + uuid
        else
            url = 'dataset/' + uuid + '/' + x
        end
    end

    Request.new(url, opts, verbose, options).perform
end

.getdata_dataset_metrics(x, verbose, options) ⇒ Object

:nodoc:



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# File 'lib/gbifrb/get_data.rb', line 98

def self.getdata_dataset_metrics(x, verbose, options) # :nodoc:
    url = 'dataset/' + x + '/metrics'
    Request.new(url, {}, verbose, options).perform
end

.getdata_installations(x, uuid, opts, verbose, options) ⇒ Object

:nodoc:



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# File 'lib/gbifrb/get_data.rb', line 75

def self.getdata_installations(x, uuid, opts, verbose, options) # :nodoc:
    if !['all','deleted', 'nonPublishing'].include? x and uuid.nil?
        stop('You must specify a uuid if data does not equal all and data does not equal one of deleted or nonPublishing')
    end

    if uuid.nil?
        if x == 'all'
            url = 'installation'
        else
            url = 'installation/' + x
        end
    else
        if x == 'all'
            url = 'installation/' + uuid
        else
            url = 'installation/' + uuid + '/' + x
        end
    end

    Request.new(url, opts, verbose, options).perform
    # return {'meta': get_meta(res), 'data': parse_results(res, uuid)}
end

.getdata_networks(x, uuid, opts, verbose, options) ⇒ Object

:nodoc:



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# File 'lib/gbifrb/get_data.rb', line 7

def self.getdata_networks(x, uuid, opts, verbose, options) #:nodoc:
    if x != 'all' and uuid.nil?
        stop('You must specify a uuid if data does not equal "all"')
    end
    if uuid.nil?
        url = 'network'
    else
        if x == 'all'
            url = 'network/' + uuid
        else
            url = 'network/' + uuid + '/' + x
        end
    end
    Request.new(url, opts, verbose, options).perform
    # return { meta: get_meta(res), data: parse_results(res, uuid) }
end

.getdata_nodes(x, uuid, opts, isocode, verbose, options) ⇒ Object

:nodoc:



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# File 'lib/gbifrb/get_data.rb', line 24

def self.getdata_nodes(x, uuid, opts, isocode, verbose, options) #:nodoc:
    if x != 'all' and uuid.nil?
        stop('You must specify a uuid if data does not equal "all"')
    end

    if uuid.nil?
        if x == 'all'
            url = 'node'
        else
            if !isocode.nil? and x == 'country'
                url = 'node/country/' + isocode
            else
                url = 'node/' + x
            end
        end
    else
        if x == 'all'
            url = 'node/' + uuid
        else
            url = 'node/' + uuid + '/' + x
        end
    end

    Request.new(url, opts, verbose, options).perform
    # return {'meta': get_meta(res), 'data': parse_results(res, uuid)}
end

.getdata_orgs(x, uuid, opts, verbose, options) ⇒ Object

:nodoc:



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# File 'lib/gbifrb/get_data.rb', line 51

def self.getdata_orgs(x, uuid, opts, verbose, options) # :nodoc:
    nouuid = ['all', 'deleted', 'pending', 'nonPublishing']
    if !nouuid.include? x and uuid.nil?
        stop('You must specify a uuid if data does not equal "all" and data does not equal one of ' + nouuid.join(', '))
    end

    if uuid.nil?
        if x == 'all'
            url = 'organization'
        else
            url = 'organization/' + x
        end
    else
        if x == 'all'
            url = 'organization/' + uuid
        else
            url = 'organization/' + uuid + '/' + x
        end
    end

    Request.new(url, opts, verbose, options).perform
    # return {'meta': get_meta(res), 'data': parse_results(res, uuid)}
end

.installations(data: 'all', uuid: nil, q: nil, identifier: nil, identifierType: nil, limit: 100, offset: nil, verbose: nil, options: nil) ⇒ Hash

Installations metadata.

References: www.gbif.org/developer/registry#installations

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.installations(limit: 5)
registry.installations(q: "france")
registry.installations(uuid: "b77901f9-d9b0-47fa-94e0-dd96450aa2b4")
registry.installations(data: 'contact', uuid: "b77901f9-d9b0-47fa-94e0-dd96450aa2b4")
registry.installations(data: 'contact', uuid: "2e029a0c-87af-42e6-87d7-f38a50b78201")
registry.installations(data: 'endpoint', uuid: "b77901f9-d9b0-47fa-94e0-dd96450aa2b4")
registry.installations(data: 'dataset', uuid: "b77901f9-d9b0-47fa-94e0-dd96450aa2b4")
registry.installations(data: 'deleted')
registry.installations(data: 'deleted', limit: 2)
registry.installations(identifierType: 'DOI', limit: 2)
# FIXME: doesn't work yet
# registry.installations(data: ['deleted','nonPublishing'], limit: 2)

Parameters:

  • data (String) (defaults to: 'all') —

    The type of data to get. Default is all data. If not ‘all’, then one or more of ‘contact’, ‘endpoint’, ‘dataset’, ‘comment’, ‘deleted’, ‘nonPublishing’.

  • uuid (String) (defaults to: nil) —

    UUID of the data node provider. This must be specified if data is anything other than ‘all’.

  • q (String) (defaults to: nil) —

    Query nodes. Only used when ‘data=’all”. Ignored otherwise.

  • identifier (fixnum) (defaults to: nil) —

    The value for this parameter can be a simple string or integer, e.g. identifier=120

  • identifierType (String) (defaults to: nil) —

    Used in combination with the identifier parameter to filter identifiers by identifier type: ‘DOI’, ‘FTP’, ‘GBIF_NODE’, ‘GBIF_PARTICIPANT’, ‘GBIF_PORTAL’, ‘HANDLER’, ‘LSID’, ‘UNKNOWN’, ‘URI’, ‘URL’, ‘UUID’

  • offset (Fixnum) (defaults to: nil) —

    Number of record to start at, any non-negative integer. Default: 0

  • limit (Fixnum) (defaults to: 100) —

    Number of results to return. Default: 100

  • verbose (Boolean) (defaults to: nil) —

    Print request headers to stdout. Default: false

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details

Returns:



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# File 'lib/gbifrb/Registry.rb', line 225

def self.installations(data: 'all', uuid: nil, q: nil, identifier: nil,
  identifierType: nil, limit: 100, offset: nil, verbose: nil, options: nil)

    arguments = { q: q, limit: limit, offset: offset, identifier: identifier,
        identifierType: identifierType }.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }
    data_choices = ['all', 'contact', 'endpoint', 'dataset',
        'identifier', 'tag', 'machineTag', 'comment',
        'deleted', 'nonPublishing']
    check_data(data, data_choices)
    self.getdata_installations(data, uuid, opts, verbose, options)
    # if len2(data) == 1
    #     return self.getdata_installations(data, uuid, opts, verbose, options)
    #   else
    #     return [self.getdata_installations(x, uuid, opts, verbose, options) for x in data]
    # end
end

.networks(data: 'all', uuid: nil, q: nil, identifier: nil, identifierType: nil, limit: 100, offset: nil, verbose: nil, options: nil) ⇒ Hash

Networks metadata

References: www.gbif.org/developer/registry#networks

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.networks(limit: 5)
registry.networks(uuid: '16ab5405-6c94-4189-ac71-16ca3b753df7')
registry.networks(data: 'endpoint', uuid: '16ab5405-6c94-4189-ac71-16ca3b753df7')

Parameters:

  • data (String) (defaults to: 'all') —

    The type of data to get. Default: ‘all’

  • uuid (String) (defaults to: nil) —

    UUID of the data network provider. This must be specified if data is anything other than ‘all’.

  • q (String) (defaults to: nil) —

    Query networks. Only used when ‘data = ’all”. Ignored otherwise.

  • identifier (fixnum) (defaults to: nil) —

    The value for this parameter can be a simple string or integer, e.g. identifier=120

  • identifierType (String) (defaults to: nil) —

    Used in combination with the identifier parameter to filter identifiers by identifier type: ‘DOI’, ‘FTP’, ‘GBIF_NODE’, ‘GBIF_PARTICIPANT’, ‘GBIF_PORTAL’, ‘HANDLER’, ‘LSID’, ‘UNKNOWN’, ‘URI’, ‘URL’, ‘UUID’

  • offset (Fixnum) (defaults to: nil) —

    Number of record to start at, any non-negative integer. Default: 0

  • limit (Fixnum) (defaults to: 100) —

    Number of results to return. Default: 100

  • verbose (Boolean) (defaults to: nil) —

    Print request headers to stdout. Default: false

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details

Returns:



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# File 'lib/gbifrb/Registry.rb', line 49

def self.networks(data: 'all', uuid: nil, q: nil, identifier: nil,
  identifierType: nil, limit: 100, offset: nil, verbose: nil, options: nil)

    arguments = { q: q,  limit: limit,  offset: offset,  identifier: identifier,
         identifierType: identifierType}.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }

    data_choices = ['all', 'contact', 'endpoint', 'identifier',
        'tag', 'machineTag', 'comment', 'constituents']
    check_data(data, data_choices)
    return self.getdata_networks(data, uuid, opts, verbose, options)
    # if len2(data) == 1
    #     return getdata(data, uuid, args)
    # else
    #     return [getdata(x, uuid, args) for x in data]
    # end
end

.nodes(data: 'all', uuid: nil, q: nil, identifier: nil, identifierType: nil, limit: 100, offset: nil, isocode: nil, verbose: nil, options: nil) ⇒ Hash

Nodes metadata

References www.gbif.org/developer/registry#nodes

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.nodes(limit: 5)
registry.nodes(identifier: 120)
registry.nodes(uuid: "1193638d-32d1-43f0-a855-8727c94299d8")
registry.nodes(data: 'identifier', uuid: "03e816b3-8f58-49ae-bc12-4e18b358d6d9")
# FIXME: not working yet
# registry.nodes(data: ['identifier','organization','comment'], uuid: "03e816b3-8f58-49ae-bc12-4e18b358d6d9")

uuids = ["8cb55387-7802-40e8-86d6-d357a583c596","02c40d2a-1cba-4633-90b7-e36e5e97aba8",
     "7a17efec-0a6a-424c-b743-f715852c3c1f","b797ce0f-47e6-4231-b048-6b62ca3b0f55",
     "1193638d-32d1-43f0-a855-8727c94299d8","d3499f89-5bc0-4454-8cdb-60bead228a6d",
     "cdc9736d-5ff7-4ece-9959-3c744360cdb3","a8b16421-d80b-4ef3-8f22-098b01a89255",
     "8df8d012-8e64-4c8a-886e-521a3bdfa623","b35cf8f1-748d-467a-adca-4f9170f20a4e",
     "03e816b3-8f58-49ae-bc12-4e18b358d6d9","073d1223-70b1-4433-bb21-dd70afe3053b",
     "07dfe2f9-5116-4922-9a8a-3e0912276a72","086f5148-c0a8-469b-84cc-cce5342f9242",
     "0909d601-bda2-42df-9e63-a6d51847ebce","0e0181bf-9c78-4676-bdc3-54765e661bb8",
     "109aea14-c252-4a85-96e2-f5f4d5d088f4","169eb292-376b-4cc6-8e31-9c2c432de0ad",
     "1e789bc9-79fc-4e60-a49e-89dfc45a7188","1f94b3ca-9345-4d65-afe2-4bace93aa0fe"]

# [ registry.nodes(data: 'identifier', uuid: x) for x in uuids ] # not working yet

Parameters:

  • data (String) (defaults to: 'all') —

    The type of data to get. Default: ‘all’

  • uuid (String) (defaults to: nil) —

    UUID of the data node provider. This must be specified if data is anything other than ‘all’.

  • q (String) (defaults to: nil) —

    Query nodes. Only used when ‘data = ’all”

  • identifier (fixnum) (defaults to: nil) —

    The value for this parameter can be a simple string or integer, e.g. identifier=120

  • identifierType (String) (defaults to: nil) —

    Used in combination with the identifier parameter to filter identifiers by identifier type: ‘DOI’, ‘FTP’, ‘GBIF_NODE’, ‘GBIF_PARTICIPANT’, ‘GBIF_PORTAL’, ‘HANDLER’, ‘LSID’, ‘UNKNOWN’, ‘URI’, ‘URL’, ‘UUID’

  • isocode (String) (defaults to: nil) —

    A 2 letter country code. Only used if ‘data = ’country”.

  • offset (Fixnum) (defaults to: nil) —

    Number of record to start at, any non-negative integer. Default: 0

  • limit (Fixnum) (defaults to: 100) —

    Number of results to return. Default: 100

  • verbose (Boolean) (defaults to: nil) —

    Print request headers to stdout. Default: false

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details

Returns:



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# File 'lib/gbifrb/Registry.rb', line 112

def self.nodes(data: 'all', uuid: nil, q: nil, identifier: nil,
  identifierType: nil, limit: 100, offset: nil, isocode: nil,
  verbose: nil, options: nil)

    arguments = { q: q, limit: limit, offset: offset, identifier: identifier,
        identifierType: identifierType }.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }
    data_choices = ['all', 'organization', 'endpoint',
        'identifier', 'tag', 'machineTag', 'comment',
        'pendingEndorsement', 'country', 'dataset', 'installation']
    check_data(data, data_choices)
    return self.getdata_nodes(data, uuid, opts, isocode, verbose, options)
    # if len2(data) == 1
    #   return self.getdata_nodes(data, uuid, args)
    # else
    #   return [self.getdata_nodes(x, uuid, args) for x in data]
    # end
end

.organizations(data: 'all', uuid: nil, q: nil, identifier: nil, identifierType: nil, limit: 100, offset: nil, verbose: nil, options: nil) ⇒ Hash

Organizations metadata

References: www.gbif.org/developer/registry#organizations

Examples:


require 'gbifrb'

registry = Gbif::Registry
registry.organizations(limit: 5)
registry.organizations(q: "france")
registry.organizations(identifier: 120)
registry.organizations(uuid: "e2e717bf-551a-4917-bdc9-4fa0f342c530")
registry.organizations(data: 'contact', uuid: "e2e717bf-551a-4917-bdc9-4fa0f342c530")
registry.organizations(data: 'endpoint', uuid: "e2e717bf-551a-4917-bdc9-4fa0f342c530")
registry.organizations(data: 'deleted')
registry.organizations(data: 'deleted', limit: 2)
registry.organizations(identifierType: 'DOI', limit: 2)
# FIXME: doesn't work yet
# registry.organizations(data: ['deleted','nonPublishing'], limit: 2)

Parameters:

  • data (String) (defaults to: 'all') —

    The type of data to get. Default is all data. If not ‘all’, then one or more of ‘contact’, ‘endpoint’, ‘identifier’, ‘tag’, ‘machineTag’, ‘comment’, ‘hostedDataset’, ‘ownedDataset’, ‘deleted’, ‘pending’, ‘nonPublishing’.

  • uuid (String) (defaults to: nil) —

    UUID of the data node provider. This must be specified if data is anything other than ‘all’.

  • q (String) (defaults to: nil) —

    Query nodes. Only used when ‘data=’all”. Ignored otherwise.

  • identifier (fixnum) (defaults to: nil) —

    The value for this parameter can be a simple string or integer, e.g. identifier=120

  • identifierType (String) (defaults to: nil) —

    Used in combination with the identifier parameter to filter identifiers by identifier type: ‘DOI’, ‘FTP’, ‘GBIF_NODE’, ‘GBIF_PARTICIPANT’, ‘GBIF_PORTAL’, ‘HANDLER’, ‘LSID’, ‘UNKNOWN’, ‘URI’, ‘URL’, ‘UUID’

  • offset (Fixnum) (defaults to: nil) —

    Number of record to start at, any non-negative integer. Default: 0

  • limit (Fixnum) (defaults to: 100) —

    Number of results to return. Default: 100

  • verbose (Boolean) (defaults to: nil) —

    Print request headers to stdout. Default: false

  • options (Hash) (defaults to: nil) —

    Hash of options for configuring the request, passed on to Faraday.new

    • timeout [Fixnum] open/read timeout Integer in seconds

    • open_timeout [Fixnum] read timeout Integer in seconds

    • proxy [Hash] hash of proxy options

      • uri [String] Proxy Server URI

      • user [String] Proxy server username

      • password [String] Proxy server password

    • params_encoder [Hash] not sure what this is

    • bind [Hash] A hash with host and port values

    • boundary [String] of the boundary value

    • oauth [Hash] A hash with OAuth details

Returns:



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# File 'lib/gbifrb/Registry.rb', line 169

def self.organizations(data: 'all', uuid: nil, q: nil, identifier: nil,
  identifierType: nil, limit: 100, offset: nil,
  verbose: nil, options: nil)

    arguments = { q: q, limit: limit, offset: offset, identifier: identifier,
        identifierType: identifierType }.tostrings
    opts = arguments.delete_if { |k, v| v.nil? }
    data_choices = ['all', 'contact', 'endpoint',
        'identifier', 'tag', 'machineTag', 'comment', 'hostedDataset',
        'ownedDataset', 'deleted', 'pending', 'nonPublishing']
    check_data(data, data_choices)
    self.getdata_orgs(data, uuid, opts, verbose, options)
    # if len2(data) == 1
    #     return self.getdata_orgs(data, uuid, args, **kwargs)
    # else
    #     return [self.getdata_orgs(x, uuid, args, **kwargs) for x in data]
    # end
end