Class: Bio::TRANSFAC::GENE

Inherits:
Bio::TRANSFAC show all
Defined in:
lib/bio/db/transfac.rb

Constant Summary

Constants inherited from Bio::TRANSFAC

DELIMITER, TAGSIZE

Instance Method Summary collapse

Methods inherited from Bio::TRANSFAC

#ac, #cc, #dt, #oc, #os, #ra, #rl, #rn, #rt

Methods inherited from DB

#entry_id, #exists?, #fetch, #get, open, #tags

Constructor Details

#initialize(entry) ⇒ GENE

Returns a new instance of GENE.



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# File 'lib/bio/db/transfac.rb', line 336

def initialize(entry)
  super(entry)
end

Instance Method Details

#bc ⇒ Object

BC Bucher promoter



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# File 'lib/bio/db/transfac.rb', line 351

def bc
  field_fetch('BC')
end

#bs ⇒ Object

BS TRANSFAC SITE positions and accession numbers



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# File 'lib/bio/db/transfac.rb', line 356

def bs
  field_fetch('BS')
end

#co ⇒ Object

CO COMPEL accession number



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# File 'lib/bio/db/transfac.rb', line 361

def co
  field_fetch('CO')
end

#de ⇒ Object

DE



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# File 'lib/bio/db/transfac.rb', line 346

def de
  field_fetch('DE')
end

#sd ⇒ Object

SD Short description/name of the gene



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# File 'lib/bio/db/transfac.rb', line 341

def sd
  field_fetch('SD')
end

#tr ⇒ Object

TR TRRD accession number



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# File 'lib/bio/db/transfac.rb', line 366

def tr
  field_fetch('TR')
end