Class: Bio::DDBJ::REST::DDBJ

Inherits:
WABItemplate show all
Defined in:
lib/bio/io/ddbjrest.rb

Overview

Description

DDBJ (DNA DataBank of Japan) entry retrieval functions.

Examples

see xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en

Constant Summary

Constants inherited from WABItemplate

WABItemplate::WABI_HOST, WABItemplate::WABI_PATH

Instance Method Summary collapse

Instance Method Details

#countBasePair(accession) ⇒ Object

Number and ratio of each base such as A,T,G,C.

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=countBasePair&mode=methodDetail

Arguments:

  • (required) accession: (String) accession

Returns

(String) tab-deliminated text



167
 
# File 'lib/bio/io/ddbjrest.rb', line 167

def countBasePair(accession); end

#get(accessionList, paramList) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=get&mode=methodDetail



171
 
# File 'lib/bio/io/ddbjrest.rb', line 171

def get(accessionList, paramList); end

#getAllFeatures(accession) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getAllFeatures&mode=methodDetail



175
 
# File 'lib/bio/io/ddbjrest.rb', line 175

def getAllFeatures(accession); end

#getFFEntry(accession) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getFFEntry&mode=methodDetail



179
 
# File 'lib/bio/io/ddbjrest.rb', line 179

def getFFEntry(accession); end

#getRelatedFeatures(accession, start, stop) ⇒ Object

xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getRelatedFeatures&mode=methodDetail



183
 
# File 'lib/bio/io/ddbjrest.rb', line 183

def getRelatedFeatures(accession, start, stop); end

#getRelatedFeaturesSeq(accession, start, stop) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getRelatedFeaturesSeq&mode=methodDetail



187
 
# File 'lib/bio/io/ddbjrest.rb', line 187

def getRelatedFeaturesSeq(accession, start, stop); end