Class: Bio::DDBJ::REST::Blast

Inherits:

WABItemplate

• Object
• WABItemplate
• Bio::DDBJ::REST::Blast

Defined in:

lib/bio/io/ddbjrest.rb

Overview

Description

DDBJ (DNA DataBank of Japan) BLAST web service. See below for details and examples.

Users normally would want to use searchParamAsync or searchParallelAsync with RequestManager.

• xml.nig.ac.jp/wabi/Method?serviceName=Blast&mode=methodList&lang=en

Constant Summary

Constants inherited from WABItemplate

WABItemplate::WABI_HOST, WABItemplate::WABI_PATH

Instance Method Summary

• #extractPosition(result) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=extractPosition&mode=methodDetail.

• #getSupportDatabaseList ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=getSupportDatabaseList&mode=methodDetail.

• #searchParallel(program, database, query, param) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParallel&mode=methodDetail.

• #searchParallelAsync(program, database, query, param) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParallelAsync&mode=methodDetail.

• #searchParam(program, database, query, param) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParam&mode=methodDetail.

• #searchParamAsync(program, database, query, param) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParamAsync&mode=methodDetail.

• #searchSimple(program, database, query) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchSimple&mode=methodDetail.

• #searchSimpleAsync(program, database, query) ⇒ Object

  see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchSimpleAsync&mode=methodDetail.

Instance Method Details

#extractPosition(result) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=extractPosition&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 203

def extractPosition(result); end

#getSupportDatabaseList ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=getSupportDatabaseList&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 207

def getSupportDatabaseList(); end

#searchParallel(program, database, query, param) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParallel&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 211

def searchParallel(program, database, query, param); end

#searchParallelAsync(program, database, query, param) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParallelAsync&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 215

def searchParallelAsync(program, database,
query, param); end

#searchParam(program, database, query, param) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParam&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 220

def searchParam(program, database, query, param); end

#searchParamAsync(program, database, query, param) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParamAsync&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 224

def searchParamAsync(program, database,
query, param); end

#searchSimple(program, database, query) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchSimple&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 229

def searchSimple(program, database, query); end

#searchSimpleAsync(program, database, query) ⇒ Object

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchSimpleAsync&mode=methodDetail

# File 'lib/bio/io/ddbjrest.rb', line 233

def searchSimpleAsync(program, database, query); end