Class: Bio::DDBJ::REST::DDBJ
- Inherits:
-
WABItemplate
- Object
- WABItemplate
- Bio::DDBJ::REST::DDBJ
- Defined in:
- lib/bio/io/ddbjrest.rb
Overview
Description
DDBJ (DNA DataBank of Japan) entry retrieval functions.
Examples
see xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en
Constant Summary
Constants inherited from WABItemplate
WABItemplate::WABI_HOST, WABItemplate::WABI_PATH
Instance Method Summary collapse
-
#countBasePair(accession) ⇒ Object
Number and ratio of each base such as A,T,G,C.
- #get(accessionList, paramList) ⇒ Object
- #getAllFeatures(accession) ⇒ Object
- #getFFEntry(accession) ⇒ Object
- #getRelatedFeatures(accession, start, stop) ⇒ Object
- #getRelatedFeaturesSeq(accession, start, stop) ⇒ Object
Instance Method Details
#countBasePair(accession) ⇒ Object
Number and ratio of each base such as A,T,G,C.
see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=countBasePair&mode=methodDetail
Arguments:
-
(required) accession: (String) accession
- Returns
-
(String) tab-deliminated text
167 |
# File 'lib/bio/io/ddbjrest.rb', line 167 def countBasePair(accession); end |
#get(accessionList, paramList) ⇒ Object
171 |
# File 'lib/bio/io/ddbjrest.rb', line 171 def get(accessionList, paramList); end |
#getAllFeatures(accession) ⇒ Object
175 |
# File 'lib/bio/io/ddbjrest.rb', line 175 def getAllFeatures(accession); end |
#getFFEntry(accession) ⇒ Object
179 |
# File 'lib/bio/io/ddbjrest.rb', line 179 def getFFEntry(accession); end |
#getRelatedFeatures(accession, start, stop) ⇒ Object
183 |
# File 'lib/bio/io/ddbjrest.rb', line 183 def (accession, start, stop); end |
#getRelatedFeaturesSeq(accession, start, stop) ⇒ Object
187 |
# File 'lib/bio/io/ddbjrest.rb', line 187 def (accession, start, stop); end |